MeltDBWiki/HowTos: Difference between revisions

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== Installing a MeltDB server on Mac OS X ==
== Using the public MeltDB experiments ==


Prerequisities:
Login to the public MeltDB project using the guest account:


* xampp (version 0.5) package for Mac OS X
Guest login
* R http://cran.r-project.org/bin/macosx/
* XCMS http://metlin.scripps.edu/download/
* metaB


checkout the following modules from the bioinfo CVS repository at [[CeBiTec]]
To analyze the publicly available datasets in MeltDB, please
select 'Browse/Analyse an existing Experiment' from the start page.


* MeltDB
Select the 'Three carbon sources' experiment by clicking
* MeltDB_web
on the folder icon to the left.
* projectmanagement


The textual display of the experiment is presented and
a number of potential actions together with their shor descriptions
are listed below


<pre><nowiki>
Select
cd
mkdir Melt
cd Melt
cvs update -dPA MeltDB MeltDB_web projectmanagement
</nowiki></pre>
 
 
 
<pre><nowiki>
su root
cd /Applications/xampp/xamppfiles/lib
chmod 755 perl5
</nowiki></pre>
 
 
=== Install additional perl Modules ===
 
 
<pre><nowiki>
cd /Applications/xampp/xamppfiles/bin/
./cpan CGI::Session::MySQL Digest::MD5 DB_File::Lock Fcntl Crypt::GeneratePassword DBI Config::IniFiles HTML::Template CGI::Ajax DBD::mysql
</nowiki></pre>
 
 
=== Create user_conf.sh at MeltDB_web/share/www ===
 
 
<pre><nowiki>
PORT=60086
INSTALLDIR=/Users/<your_login>/Melt/
APACHEDIR=/Applications/xampp/xamppfiles/
</nowiki></pre>
 
 
=== Start the MeltDB webserver ===

Revision as of 17:52, 3 April 2008

Using the public MeltDB experiments

Login to the public MeltDB project using the guest account:

Guest login

To analyze the publicly available datasets in MeltDB, please select 'Browse/Analyse an existing Experiment' from the start page.

Select the 'Three carbon sources' experiment by clicking on the folder icon to the left.

The textual display of the experiment is presented and a number of potential actions together with their shor descriptions are listed below

Select

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