BACDIVERS-PortalWiki - Revision history

Admin: 10 revisions

2011-10-26T06:17:06Z

10 revisions

← Older revision	Revision as of 08:17, 26 October 2011
(No difference)

imported>KoljaHenckel at 08:45, 19 December 2006

2006-12-19T08:45:17Z

← Older revision		Revision as of 10:45, 19 December 2006
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	* [[MGE-PortalWiki/BLAST\|BLAST]]		* [[MGE-PortalWiki/BLAST\|BLAST]]
	* [[MGE-PortalWiki/EMOWSE\|EMOWSE]]		* [[MGE-PortalWiki/EMOWSE\|EMOWSE]]
	* [[MGE-PortalWiki/EMBOSS\|EMBOSS]]

	<span id="contact"></span>		<span id="contact"></span>
	== Contact ==		== Contact ==
	Please feel free at any time to send us a email to [[MailTo(Stefan DOT Weidner AT CeBiTec DOT Uni DASH Bielefeld DOT de)]] with questions or suggestions for improvements.		Please feel free at any time to send us a email to [[MailTo(Stefan DOT Weidner AT CeBiTec DOT Uni DASH Bielefeld DOT de)]] with questions or suggestions for improvements.

imported>StefanWeidner at 20:41, 7 December 2005

2005-12-07T20:41:58Z

← Older revision		Revision as of 22:41, 7 December 2005
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	= BACDIVERS-[[PortalWiki]] Overview Page =		= BACDIVERS-[[PortalWiki]] Overview Page =

	This is the primary source of documentation for ~~the~~ the		This is the primary source of documentation for the
	[http://www.cebitec.uni-bielefeld.de/groups/brf/software/bacd-portal/ BACDIVERS-Portal].		[http://www.cebitec.uni-bielefeld.de/groups/brf/software/bacd-portal/ BACDIVERS-Portal].

imported>JomunaChoudhuri at 08:25, 24 August 2005

2005-08-24T08:25:49Z

← Older revision		Revision as of 10:25, 24 August 2005
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	<span id="tools"></span>		<span id="tools"></span>
	== Information about Tools ==		== Information about Tools ==
	Some public databases are available for analysis with the Platform tools. In addition all sequence data sets created within BACDIVERS can be analyzed with the		Some public databases are available for analysis with the Platform tools. In addition, all sequence data sets created within BACDIVERS can be analyzed with these tools. In order to avoid redundancies and facilitate maintenance, the Wiki pages for the tools listed below are described within the Marine Genomics (MGE) Wiki tools section.
	tools.

	'''Please note:''' Only those data sets that you have access to will be visible within the tool section.		'''Please note:''' Only those data sets that you have access to will be visible within the tool section.

	* [[/BLAST]]		* [[MGE-PortalWiki/BLAST\|BLAST]]
	* [[/EMOWSE]]		* [[MGE-PortalWiki/EMOWSE\|EMOWSE]]
	* [[/EMBOSS]]		* [[MGE-PortalWiki/EMBOSS\|EMBOSS]]

	<span id="contact"></span>		<span id="contact"></span>
	== Contact ==		== Contact ==
	Please feel free at any time to send us a email to [[MailTo(Stefan DOT Weidner AT CeBiTec DOT Uni DASH Bielefeld DOT de)]] with questions or suggestions for improvements.		Please feel free at any time to send us a email to [[MailTo(Stefan DOT Weidner AT CeBiTec DOT Uni DASH Bielefeld DOT de)]] with questions or suggestions for improvements.

imported>JomunaChoudhuri at 08:20, 24 August 2005

2005-08-24T08:20:20Z

← Older revision		Revision as of 10:20, 24 August 2005
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	== Request Access to the BACDIVERS-Portal ==		== Request Access to the BACDIVERS-Portal ==

	If you are a '''BACDIVERS member''', you can request access to the Portal by sending an e-mail to [[MailTo(Stefan DOT Weidner AT CeBiTec DOT Uni DASH Bielefeld DOT DE)]]. After validation the request will be forwarded to the Bioinformatics Platform. You will receive an automatic mail from our General Project Management System (GPMS) containing your login to the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/bacd-portal/ BACDIVERS-Portal] and password.		If you are a '''BACDIVERS member''', you can request access to the Portal by sending an e-mail to [[MailTo(Stefan DOT Weidner AT CeBiTec DOT Uni DASH Bielefeld DOT de)]]. After validation the request will be forwarded to the Bioinformatics Platform. You will receive an automatic mail from our General Project Management System (GPMS) containing your login to the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/bacd-portal/ BACDIVERS-Portal] and password.

	Once logged into the Portal, you can request access to any project within BACDIVERS. See section "Data Access" below, for details.		Once logged into the Portal, you can request access to any project within BACDIVERS. See section "Data Access" below, for details.
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	<span id="contact"></span>		<span id="contact"></span>
	== Contact ==		== Contact ==
	Please feel free at any time to send us a email to [[MailTo(Stefan DOT Weidner AT CeBiTec DOT Uni DASH Bielefeld DOT DE)]] with questions or suggestions for improvements.		Please feel free at any time to send us a email to [[MailTo(Stefan DOT Weidner AT CeBiTec DOT Uni DASH Bielefeld DOT de)]] with questions or suggestions for improvements.

imported>JomunaChoudhuri at 08:19, 24 August 2005

2005-08-24T08:19:05Z

← Older revision		Revision as of 10:19, 24 August 2005
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	== Request Access to the BACDIVERS-Portal ==		== Request Access to the BACDIVERS-Portal ==

	If you are a '''BACDIVERS member''', you can request access to the Portal by sending an e-mail to Stefan.Weidner~~@[[~~CeBiTec~~]].~~Uni-Bielefeld.DE. After validation the request will be forwarded to the Bioinformatics Platform. You will receive an automatic mail from our General Project Management System (GPMS) containing your login to the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/bacd-portal/ BACDIVERS-Portal] and password.		If you are a '''BACDIVERS member''', you can request access to the Portal by sending an e-mail to [[MailTo(Stefan DOT Weidner AT CeBiTec DOT Uni DASH Bielefeld DOT DE)]]. After validation the request will be forwarded to the Bioinformatics Platform. You will receive an automatic mail from our General Project Management System (GPMS) containing your login to the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/bacd-portal/ BACDIVERS-Portal] and password.

	Once logged into the Portal, you can request access to any project within BACDIVERS. See section "Data Access" below, for details.		Once logged into the Portal, you can request access to any project within BACDIVERS. See section "Data Access" below, for details.
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	<span id="contact"></span>		<span id="contact"></span>
	== Contact ==		== Contact ==
	Please feel free at any time to send us a email (at Stefan.Weidner~~[at~~]~~cebitec.uni-bielefeld.de)~~ with questions or suggestions for improvements.		Please feel free at any time to send us a email to [[MailTo(Stefan DOT Weidner AT CeBiTec DOT Uni DASH Bielefeld DOT DE)]] with questions or suggestions for improvements.

imported>JomunaChoudhuri at 08:06, 24 August 2005

2005-08-24T08:06:47Z

← Older revision		Revision as of 10:06, 24 August 2005
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	'''Please note:''' Only those data sets that you have access to will be visible within the tool section.		'''Please note:''' Only those data sets that you have access to will be visible within the tool section.

	* /BLAST		* [[/BLAST]]
	* /EMOWSE		* [[/EMOWSE]]
	* /EMBOSS		* [[/EMBOSS]]

	<span id="contact"></span>		<span id="contact"></span>
	== Contact ==		== Contact ==
	Please feel free at any time to send us a email (at Stefan.Weidner[at]cebitec.uni-bielefeld.de) with questions or suggestions for improvements.		Please feel free at any time to send us a email (at Stefan.Weidner[at]cebitec.uni-bielefeld.de) with questions or suggestions for improvements.

imported>JomunaChoudhuri at 08:05, 24 August 2005

2005-08-24T08:05:53Z

← Older revision		Revision as of 10:05, 24 August 2005
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	* [[#tools\|Information about Tools]]		* [[#tools\|Information about Tools]]
	* [[#contact\|Contact]]		* [[#contact\|Contact]]
	* ./DeveloperDocumentation		* [[/DeveloperDocumentation\|Developer Documentation]]

	The Portal contains datasets and tools for the analysis of sequence collections, microarrays, genomes etc., and it is run by the "Bioinformatics Resource Facility ([http://www.cebitec.uni-bielefeld.de/groups/brf/ BRF])".		The Portal contains datasets and tools for the analysis of sequence collections, microarrays, genomes etc., and it is run by the "Bioinformatics Resource Facility ([http://www.cebitec.uni-bielefeld.de/groups/brf/ BRF])".
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	and several Terabytes of disk space.		and several Terabytes of disk space.

	We maintain a list of ./FrequentlyAskedQuestions.		<!-- ##We maintain a list of ./FrequentlyAskedQuestions. -->

	The individual software packages contained in the platform have their own documentation		The individual software packages contained in the platform have their own documentation
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	'''Please note:''' Only those data sets that you have access to will be visible within the tool section.		'''Please note:''' Only those data sets that you have access to will be visible within the tool section.

	* ./BLAST		* /BLAST
	* ./EMOWSE		* /EMOWSE
	* ./EMBOSS		* /EMBOSS

	<span id="contact"></span>		<span id="contact"></span>
	== Contact ==		== Contact ==
	Please feel free at any time to send us a email (at ~~mg-bielefeld~~[at]cebitec.uni-bielefeld.de) with questions or suggestions for improvements.		Please feel free at any time to send us a email (at Stefan.Weidner[at]cebitec.uni-bielefeld.de) with questions or suggestions for improvements.

imported>StefanWeidner at 12:12, 29 June 2005

2005-06-29T12:12:34Z

← Older revision		Revision as of 14:12, 29 June 2005
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	__NOTOC__		__NOTOC__
	~~Describe~~ BACDIVERS-[[PortalWiki]] ~~here~~.		<!-- ##language:en -->
			= BACDIVERS-[[PortalWiki]] Overview Page =

			This is the primary source of documentation for the the
			[http://www.cebitec.uni-bielefeld.de/groups/brf/software/bacd-portal/ BACDIVERS-Portal].

			In this overview page, you will find the following topics:

			* [[#login\|Login to the Portal]]
			* [[#request\|Request Access to the BACDIVERS-Portal]]
			* [[#browsers\|Supported Web Browsers]]
			* [[#access\|Data access]]
			* [[#data\|Data integrity, data backup and recovery]]
			* [[#tools\|Information about Tools]]
			* [[#contact\|Contact]]
			* ./DeveloperDocumentation

			The Portal contains datasets and tools for the analysis of sequence collections, microarrays, genomes etc., and it is run by the "Bioinformatics Resource Facility ([http://www.cebitec.uni-bielefeld.de/groups/brf/ BRF])".

			Powered by the [http://www.cebitec.uni-bielefeld.de/groups/brf/infrastructure.html CeBiTec_Infrastructure], the BACDIVERS-Portal contains more than 500 processors
			and several Terabytes of disk space.

			We maintain a list of ./FrequentlyAskedQuestions.

			The individual software packages contained in the platform have their own documentation

			* [http://www.cebitec.uni-bielefeld.de/groups/brf/software/gendb_info/ GenDB] Sequence analysis for larger contigs (GENDB) and ESTs (GenDB!/SAMS).
			* [http://www.cebitec.uni-bielefeld.de/groups/brf/software/emma_info/ EMMA] Microarray data storage and analysis.

			<span id="login"></span>
			== Login to the Portal ==
			The portal requires a user name and password from every user. The assumption is made that every individual has his/her own private login. If two individuals share one login and use it simultaneously, terrible things will happen to the user settings and data.

			Users need to enter user name and password into the login dialog. Since the data is transported via '''https''' all traffic encrypted and thus secure.

			'''Browser Certificates'''

			Unfortunately not all institutions that issue certificates are pre-configured into all browsers. Therefore please '''accept permanently''' the CeBiTec certificate.
			Doing so will only influence your connections to Bielefeld, no other internet connects will be influenced.
			After accepting the certificate once, this question should not need to be answered again ([http://www.mozilla.org/projects/security/pki/psm/help_21/using_certs_help.html Technical Information on using Browser certificates])

			<span id="request"></span>
			== Request Access to the BACDIVERS-Portal ==

			If you are a '''BACDIVERS member''', you can request access to the Portal by sending an e-mail to Stefan.Weidner@[[CeBiTec]].Uni-Bielefeld.DE. After validation the request will be forwarded to the Bioinformatics Platform. You will receive an automatic mail from our General Project Management System (GPMS) containing your login to the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/bacd-portal/ BACDIVERS-Portal] and password.

			Once logged into the Portal, you can request access to any project within BACDIVERS. See section "Data Access" below, for details.

			<span id="browsers"></span>
			== Supported Web Browsers ==
			Please note that not all web browsers are supported with the platform. For security reasons we recommend that users use
			[http://www.mozilla.org/products/firefox/ Mozilla/Firefox] or
			[http://www.mozilla.org/products/mozilla1.x/ Mozilla].

			While other browsers might work, we '''can not test''' with every browser to ensure compatibility. We strive to use standard D-HTML to ensure
			maximum compatability.

			<span id="access"></span>
			== Data access ==

			There are two major kinds of project "accessibility" within BACDIVERS:

			* "your" projects:
			** either you are a project leader and thus have access to your "own" project data,
			** or you have already requested access to this project,
			** or the project has been made public within the whole BACDIVERS community
			* "BACDIVERS" projects:
			** other projects within BACDIVERS not yet visible to you, but to which you can request access.

			Access to projects is controlled by the project leaders via the GPMS web interface.
			All BACDIVERS members can request access to these datasets directly to the respective project leader via the Portal.

			The General Project Management System ([http://www.cebitec.uni-bielefeld.de/groups/brf/software/gpms/ GPMS]) provides the interface for requesting and granting access to projects.

			<span id="data"></span>
			== Data integrity, data backup and recovery ==
			To ensure the existence of the valuable data sets we perform nightly backup of all data on the platform. In the unlikely event of a disasterous system failure
			all data can be retrieved from backup tape.

			<span id="tools"></span>
			== Information about Tools ==
			Some public databases are available for analysis with the Platform tools. In addition all sequence data sets created within BACDIVERS can be analyzed with the
			tools.

			'''Please note:''' Only those data sets that you have access to will be visible within the tool section.

			* ./BLAST
			* ./EMOWSE
			* ./EMBOSS

			<span id="contact"></span>
			== Contact ==
			Please feel free at any time to send us a email (at mg-bielefeld[at]cebitec.uni-bielefeld.de) with questions or suggestions for improvements.

imported>StefanWeidner at 11:52, 29 June 2005

2005-06-29T11:52:53Z

← Older revision	Revision as of 13:52, 29 June 2005
(No difference)