EMMAWiki/DeveloperDocumentation - Revision history

Alu: /* Other modules */

2011-10-26T13:05:37Z

Other modules

← Older revision		Revision as of 15:05, 26 October 2011
Line 13:		Line 13:
	those packages:		those packages:

	* '''GPMS''' (aka. projectmanagement) is required by almost all [[CeBiTec]] software. It is used for user, password and project management, rights and roles. See the Self:GPMSWiki if you need more information about project creation, Applicationframes, Members, Rights, and Roles.		* '''GPMS''' (aka. projectmanagement) is required by almost all CeBiTec software. It is used for user, password and project management, rights and roles. See the Self:GPMSWiki if you need more information about project creation, Applicationframes, Members, Rights, and Roles.
	* '''ArrayLIMS''' is required for storing raw data. In EMMA it is used within Importer modules. See Self:ArrayLIMSWiki		* '''ArrayLIMS''' is required for storing raw data. In EMMA it is used within Importer modules. See Self:ArrayLIMSWiki
	* '''O2DBI''' is the object-relational mapping system use to implement the database backend. If you need to know about code generation or even want to modify EMMA's database model consult Self:O2DBIWiki		* '''O2DBI''' is the object-relational mapping system use to implement the database backend. If you need to know about code generation or even want to modify EMMA's database model consult Self:O2DBIWiki
	* '''GOParc''' is used to manage KEGG pathways and plot espression data into pathway images. There is no Self:GOParcWiki yet, but the modules in <code><nowiki>cvs/GOParc/share/perl</nowiki></code> contain a basic amount of inline POD documentation.		* '''GOParc''' is used to manage KEGG pathways and plot espression data into pathway images. There is no Self:GOParcWiki yet, but the modules in <code><nowiki>cvs/GOParc/share/perl</nowiki></code> contain a basic amount of inline POD documentation.
	* '''OntoDB''' is used to manage ontology entries from the MGED ontology. There is the Self:OntologyDBWiki, in addition the modules in <code><nowiki>cvs/ontodb/share/perl</nowiki></code> contain a basic amount of inline POD documentation.		* '''OntoDB''' is used to manage ontology entries from the MGED ontology. There is the Self:OntologyDBWiki, in addition the modules in <code><nowiki>cvs/ontodb/share/perl</nowiki></code> contain a basic amount of inline POD documentation.

Alu: /* Documentation for Developers */

2011-10-26T13:05:00Z

Documentation for Developers

← Older revision		Revision as of 15:05, 26 October 2011
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	__NOTOC__		__NOTOC__
	= Documentation for Developers =		= Documentation for Developers =
	* [[/GettingStarted\|Getting Started]]		* [[EMMAWiki/DeveloperDocumentation/GettingStarted\|Getting Started]]
	* [[/APIDocumentation\|API Documentation]]		* [[EMMAWiki/DeveloperDocumentation/APIDocumentation\|API Documentation]]
	* [[/BuildingHeatmapViewer\|Building the Heatmap Viewer]]		* [[EMMAWiki/DeveloperDocumentation/BuildingHeatmapViewer\|Building the Heatmap Viewer]]
	* [[/DevelopingPlugIns\|Developing Plugins]]		* [[EMMAWiki/DeveloperDocumentation/DevelopingPlugIns\|Developing Plugins]]
	* [[UsingTheWSInterface\|Using the WS Interface]]		* [[UsingTheWSInterface\|Using the WS Interface]]
	* [[/MagemlExporterGenerator\|MAGE-ML Exporter Generator]]		* [[EMMAWiki/DeveloperDocumentation/MagemlExporterGenerator\|MAGE-ML Exporter Generator]]

	== Other modules ==		== Other modules ==

Admin: 15 revisions

2011-10-26T06:14:03Z

15 revisions

← Older revision	Revision as of 08:14, 26 October 2011
(No difference)

imported>MichaelDondrup at 12:15, 2 April 2008

2008-04-02T12:15:45Z

← Older revision		Revision as of 14:15, 2 April 2008
Line 17:		Line 17:
	* '''O2DBI''' is the object-relational mapping system use to implement the database backend. If you need to know about code generation or even want to modify EMMA's database model consult Self:O2DBIWiki		* '''O2DBI''' is the object-relational mapping system use to implement the database backend. If you need to know about code generation or even want to modify EMMA's database model consult Self:O2DBIWiki
	* '''GOParc''' is used to manage KEGG pathways and plot espression data into pathway images. There is no Self:GOParcWiki yet, but the modules in <code><nowiki>cvs/GOParc/share/perl</nowiki></code> contain a basic amount of inline POD documentation.		* '''GOParc''' is used to manage KEGG pathways and plot espression data into pathway images. There is no Self:GOParcWiki yet, but the modules in <code><nowiki>cvs/GOParc/share/perl</nowiki></code> contain a basic amount of inline POD documentation.
	* '''OntoDB''' is used to manage ontology entries from the MGED ontology. There is no Self:~~OntoDBWiki yet~~, ~~but~~ the modules in <code><nowiki>cvs/ontodb/share/perl</nowiki></code> contain a basic amount of inline POD documentation.		* '''OntoDB''' is used to manage ontology entries from the MGED ontology. There is the Self:OntologyDBWiki, in addition the modules in <code><nowiki>cvs/ontodb/share/perl</nowiki></code> contain a basic amount of inline POD documentation.

imported>MichaelDondrup at 12:12, 2 April 2008

2008-04-02T12:12:22Z

← Older revision		Revision as of 14:12, 2 April 2008
Line 16:		Line 16:
	* '''ArrayLIMS''' is required for storing raw data. In EMMA it is used within Importer modules. See Self:ArrayLIMSWiki		* '''ArrayLIMS''' is required for storing raw data. In EMMA it is used within Importer modules. See Self:ArrayLIMSWiki
	* '''O2DBI''' is the object-relational mapping system use to implement the database backend. If you need to know about code generation or even want to modify EMMA's database model consult Self:O2DBIWiki		* '''O2DBI''' is the object-relational mapping system use to implement the database backend. If you need to know about code generation or even want to modify EMMA's database model consult Self:O2DBIWiki
			* '''GOParc''' is used to manage KEGG pathways and plot espression data into pathway images. There is no Self:GOParcWiki yet, but the modules in <code><nowiki>cvs/GOParc/share/perl</nowiki></code> contain a basic amount of inline POD documentation.
			* '''OntoDB''' is used to manage ontology entries from the MGED ontology. There is no Self:OntoDBWiki yet, but the modules in <code><nowiki>cvs/ontodb/share/perl</nowiki></code> contain a basic amount of inline POD documentation.

imported>MichaelDondrup at 12:07, 2 April 2008

2008-04-02T12:07:00Z

← Older revision		Revision as of 14:07, 2 April 2008
Line 13:		Line 13:
	those packages:		those packages:

	* '''GPMS''' (aka. projectmanagement) is required by almost all [[CeBiTec]] software. It is used for		* '''GPMS''' (aka. projectmanagement) is required by almost all [[CeBiTec]] software. It is used for user, password and project management, rights and roles. See the Self:GPMSWiki if you need more information about project creation, Applicationframes, Members, Rights, and Roles.
	user, password and project management, rights and roles. See the Self:GPMSWiki if you
	need more information about project creation, Applicationframes, Members, Rights, and Roles.

	* '''ArrayLIMS''' is required for storing raw data. In EMMA it is used within Importer modules. See Self:ArrayLIMSWiki		* '''ArrayLIMS''' is required for storing raw data. In EMMA it is used within Importer modules. See Self:ArrayLIMSWiki
	* '''O2DBI''' is the object-relational mapping system use to implement the database backend. If you need to		* '''O2DBI''' is the object-relational mapping system use to implement the database backend. If you need to know about code generation or even want to modify EMMA's database model consult Self:O2DBIWiki
	know about code generation or even want to modify EMMA's database model consult Self:O2DBIWiki

imported>MichaelDondrup at 12:06, 2 April 2008

2008-04-02T12:06:26Z

← Older revision		Revision as of 14:06, 2 April 2008
Line 14:		Line 14:

	* '''GPMS''' (aka. projectmanagement) is required by almost all [[CeBiTec]] software. It is used for		* '''GPMS''' (aka. projectmanagement) is required by almost all [[CeBiTec]] software. It is used for
	user, password and project management, rights and roles. See the ~~[[//GPMSwiki\|GPMS wiki]]~~ if you		user, password and project management, rights and roles. See the Self:GPMSWiki if you
	need more information about project creation, Applicationframes, Members, Rights, and Roles.		need more information about project creation, Applicationframes, Members, Rights, and Roles.

			* '''ArrayLIMS''' is required for storing raw data. In EMMA it is used within Importer modules. See Self:ArrayLIMSWiki
			* '''O2DBI''' is the object-relational mapping system use to implement the database backend. If you need to
			know about code generation or even want to modify EMMA's database model consult Self:O2DBIWiki

imported>MichaelDondrup at 11:54, 2 April 2008

2008-04-02T11:54:36Z

← Older revision		Revision as of 13:54, 2 April 2008
Line 14:		Line 14:

	* '''GPMS''' (aka. projectmanagement) is required by almost all [[CeBiTec]] software. It is used for		* '''GPMS''' (aka. projectmanagement) is required by almost all [[CeBiTec]] software. It is used for
	user, password and project management, rights and roles. See the [[/GPMSwiki\|GPMS wiki]] if you		user, password and project management, rights and roles. See the [[//GPMSwiki\|GPMS wiki]] if you
	need more information about project creation, Applicationframes, Members, Rights, and Roles.		need more information about project creation, Applicationframes, Members, Rights, and Roles.

imported>MichaelDondrup at 11:54, 2 April 2008

2008-04-02T11:54:06Z

← Older revision		Revision as of 13:54, 2 April 2008
Line 7:		Line 7:
	* [[UsingTheWSInterface\|Using the WS Interface]]		* [[UsingTheWSInterface\|Using the WS Interface]]
	* [[/MagemlExporterGenerator\|MAGE-ML Exporter Generator]]		* [[/MagemlExporterGenerator\|MAGE-ML Exporter Generator]]

			== Other modules ==

			EMMA uses other software packages, so you might need to consult documentation specific to
			those packages:

			* '''GPMS''' (aka. projectmanagement) is required by almost all [[CeBiTec]] software. It is used for
			user, password and project management, rights and roles. See the [[/GPMSwiki\|GPMS wiki]] if you
			need more information about project creation, Applicationframes, Members, Rights, and Roles.

imported>KaiRunte at 11:03, 13 September 2007

2007-09-13T11:03:19Z

← Older revision		Revision as of 13:03, 13 September 2007
Line 1:		Line 1:
	__NOTOC__		__NOTOC__
	= Documentation for Developers =		= Documentation for Developers =
	* /GettingStarted		* [[/GettingStarted\|Getting Started]]
	* [[/APIDocumentation]]		* [[/APIDocumentation\|API Documentation]]
	* /BuildingHeatmapViewer		* [[/BuildingHeatmapViewer\|Building the Heatmap Viewer]]
	* /DevelopingPlugIns		* [[/DevelopingPlugIns\|Developing Plugins]]
	* [[UsingTheWSInterface]]		* [[UsingTheWSInterface\|Using the WS Interface]]
			* [[/MagemlExporterGenerator\|MAGE-ML Exporter Generator]]

← Older revision		Revision as of 15:05, 26 October 2011
Line 1:		Line 1:
	__NOTOC__		__NOTOC__
	= Documentation for Developers =		= Documentation for Developers =
	* [[/GettingStarted\|Getting Started]]		* [[EMMAWiki/DeveloperDocumentation/GettingStarted\|Getting Started]]
	* [[/APIDocumentation\|API Documentation]]		* [[EMMAWiki/DeveloperDocumentation/APIDocumentation\|API Documentation]]
	* [[/BuildingHeatmapViewer\|Building the Heatmap Viewer]]		* [[EMMAWiki/DeveloperDocumentation/BuildingHeatmapViewer\|Building the Heatmap Viewer]]
	* [[/DevelopingPlugIns\|Developing Plugins]]		* [[EMMAWiki/DeveloperDocumentation/DevelopingPlugIns\|Developing Plugins]]
	* [[UsingTheWSInterface\|Using the WS Interface]]		* [[UsingTheWSInterface\|Using the WS Interface]]
	* [[/MagemlExporterGenerator\|MAGE-ML Exporter Generator]]		* [[EMMAWiki/DeveloperDocumentation/MagemlExporterGenerator\|MAGE-ML Exporter Generator]]

	== Other modules ==		== Other modules ==