EMMAWiki/NewsAndUpdates - Revision history

Alu: /* News and Updates */

2011-10-26T13:20:50Z

News and Updates

← Older revision		Revision as of 15:20, 26 October 2011
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	-- Updates 2011		-- Updates 2011
	* Support for Agilent ~~Arrays~~		* Support for Agilent High-density arrays
	** New analysis functions		** New analysis functions
	** Updated M/A plot		** Updated M/A plot

Alu: /* News and Updates */

2011-10-26T13:20:25Z

News and Updates

@@ Line 5: / Line 5: @@
 == News and Updates ==
 '''EMMA production server updated to version 2.8'''
-* Support for [[NimbleGen]] Arrays
+* Support for NimbleGen Arrays
 ** Added a converter script for NDF to ADF array layout files
 ** Added analysis functions and importers from ArrayLIMS

Alu: /* Testing */

2011-10-26T13:15:09Z

Testing

← Older revision		Revision as of 15:15, 26 October 2011
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	* Removed a bug that would break arraylims import in rare cases. When the uploaded data file has been processed under a Windows/DOS operating system,sometimes CR/LF will be added as line-break indicator. The linebreak indicators are now converted to UNIX style during parsing.		* Removed a bug that would break arraylims import in rare cases. When the uploaded data file has been processed under a Windows/DOS operating system,sometimes CR/LF will be added as line-break indicator. The linebreak indicators are now converted to UNIX style during parsing.
	* Made the ArrayLayoutImport more robust, against empty lines. Now the layout import will ignore empty input lines and also remove quotes (aka: "").		* Made the ArrayLayoutImport more robust, against empty lines. Now the layout import will ignore empty input lines and also remove quotes (aka: "").

	~~==== Testing ====~~

	~~-- [[MichaelDondrup]] [[DateTime(2006-01-26T19:01:07Z)]]~~
	* There was a bug in List generation module of RC2 that prevented the [[DataViewer]] to display any Dataset. see https://bugs.cebitec.uni-bielefeld.de/show_bug.cgi?id=572

	~~-- [[MichaelDondrup]] [[DateTime(2006-01-24T10:34:57Z)]]~~
	* '''Import from Arraylims''' failed in RC1.

	~~-------------~~

Alu: /* New Features */

2011-10-26T13:13:55Z

New Features

← Older revision		Revision as of 15:13, 26 October 2011
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	<!-- ##language:en -->		<!-- ##language:en -->

	== ~~New Features~~ ==		== News and Updates ==

	~~==== Stable ====~~

	~~-- [[MichaelDondrup]] [[DateTime(2008-09-09T13:14:39Z)]]~~
	* fancy new logo :)

	~~-- [[MichaelDondrup]] [[DateTime(2008-08-20T15:01:11Z)]]~~

	'''EMMA production server updated to version 2.8'''		'''EMMA production server updated to version 2.8'''
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	* '''Data browser:''' The web-service feature is also available for data in the data browser. Click the ''get web-service information'' button to retrieve the info for all sequences on that page. Due to timing constraints it is impossible to do this automatically for all sequences. Avoid retrieval for more than a few hundred sequences!		* '''Data browser:''' The web-service feature is also available for data in the data browser. Click the ''get web-service information'' button to retrieve the info for all sequences on that page. Due to timing constraints it is impossible to do this automatically for all sequences. Avoid retrieval for more than a few hundred sequences!
	* '''MA-plot:''' This function now offers additional plot types such as density color plots. Therefore, the configuration dialog offers more options, such as color scheme for the density colors.		* '''MA-plot:''' This function now offers additional plot types such as density color plots. Therefore, the configuration dialog offers more options, such as color scheme for the density colors.
	* '''Vioplot:''' This is a new function which allows to plot the data distribution for a given experiment for all KEGG pathways. Please note that the availability of this feature depends on your project. Your project needs to be linked to GenDB/SAMS, the genome annotation needs to contain EC information, and the Vioplot function needs to be added to your EMMA project.		* '''Vioplot:''' This is a new function which allows to plot the data distribution for a given experiment for all KEGG pathways. Please note that the availability of this feature depends on your project. Your project needs to be linked to GenDB/SAMS, the genome annotation needs to contain EC information, and the Vioplot function needs to be added to your EMMA project.

	== Old changes (EMMA 2.2) ==		== Old changes (EMMA 2.2) ==

Alu: /* News and Updates */

2011-10-26T13:13:32Z

News and Updates

← Older revision		Revision as of 15:13, 26 October 2011
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	<!-- ## page was renamed from [[NewsAndUpdates]] -->		<!-- ## page was renamed from [[NewsAndUpdates]] -->
	<!-- ##language:en -->		<!-- ##language:en -->

	~~== News and Updates ==~~

	~~This page lists updates, newly improved features and bugfixes.~~

	== New Features ==		== New Features ==

Alu: /* News and Updates */

2011-10-26T13:13:20Z

News and Updates

← Older revision		Revision as of 15:13, 26 October 2011
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	== News and Updates ==		== News and Updates ==

	~~/!\ '''See important information for [[Firefox3\|Firefox 3 users]]''' /!\~~		This page lists updates, newly improved features and bugfixes.

	This page lists updates, newly improved features and bugfixes. The updates, listed under ''Testing'' are only available on the EMMA 2 test web-server at https://www.cebitec.uni-bielefeld.de/groups/brf/software/emma-test/ . Please note that the test-webserver is now also '''available from outside the [[CeBiTec]]-network'''. The test-server is subject to modification, down-times and non-operation without notice!

	~~Once updates have become stable, they will be moved to the production server as well.~~

	~~------~~

	~~(!) You may [http://www.cebitec.uni-bielefeld.de/groups/brf/software/wiki/EMMAWiki/NewsAndUpdates?action=subscribe subscribe to this page] to keep informed about news and changes.~~
	~~<br> You will be notified by email, whenever this page is updated. If you are asked to [[UserPreferences\| create a Wiki profile]], please fill in the form and click ''Create Profile''.~~

	~~------~~

	== New Features ==		== New Features ==

Admin: 39 revisions

2011-10-26T06:14:02Z

39 revisions

← Older revision	Revision as of 08:14, 26 October 2011
(No difference)

imported>MichaelDondrup at 13:14, 9 September 2008

2008-09-09T13:14:39Z

@@ Line 21: / Line 21: @@
 ==== Stable ====
 -- [[MichaelDondrup]] [[DateTime(2008-03-26T13:06:36Z)]]
-/!\ '''EMMA production server updated to version 2.6''' /!\
+EMMA production server updated to version 2.6
 * New Affymetrix chip pipelines:

imported>MichaelDondrup at 14:19, 19 June 2008

2008-06-19T14:19:31Z

← Older revision		Revision as of 16:19, 19 June 2008
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	== News and Updates ==		== News and Updates ==

	/!\ '''~~EMMA production sever updated to version 2.6~~''' /!\		/!\ '''See important information for [[Firefox3\|Firefox 3 users]]''' /!\

	This page lists updates, newly improved features and bugfixes. The updates, listed under ''Testing'' are only available on the EMMA 2 test web-server at https://www.cebitec.uni-bielefeld.de/groups/brf/software/emma-test/ . Please note that the test-webserver is now also '''available from outside the [[CeBiTec]]-network'''. The test-server is subject to modification, down-times and non-operation without notice!		This page lists updates, newly improved features and bugfixes. The updates, listed under ''Testing'' are only available on the EMMA 2 test web-server at https://www.cebitec.uni-bielefeld.de/groups/brf/software/emma-test/ . Please note that the test-webserver is now also '''available from outside the [[CeBiTec]]-network'''. The test-server is subject to modification, down-times and non-operation without notice!

imported>MichaelDondrup at 14:00, 2 April 2008

2008-04-02T14:00:00Z

← Older revision		Revision as of 16:00, 2 April 2008
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	==== Stable ====		==== Stable ====

			-- [[MichaelDondrup]] [[DateTime(2008-04-02T14:00:00Z)]]
			* Bug in the Arraylims import wizard caused an exception when slide information in ArrayLIMS is deleted (bug 798).
			* Bug in the [[ArraylimsImporter]] caused failed import jobs.
			* When deleting an experiment, a wrong link was displayed (bug 790)

	-- [[MichaelDondrup]] [[DateTime(2006-10-04T08:04:14Z)]]		-- [[MichaelDondrup]] [[DateTime(2006-10-04T08:04:14Z)]]