GenDBWiki/AdministratorDocumentation/DependenciesAndRequirements - Revision history

Admin: 7 revisions

2011-10-26T06:17:05Z

7 revisions

← Older revision	Revision as of 08:17, 26 October 2011
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imported>AlexanderGoesmann at 18:11, 7 March 2005

2005-03-07T18:11:37Z

← Older revision		Revision as of 20:11, 7 March 2005
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	* Sun Grid Engine >= 6.0		* Sun Grid Engine >= 6.0
	* either a local sequence retrieval system or access to a remote system (e.g. SRS)		* either a local sequence retrieval system or access to a remote system (e.g. SRS)
	* MySQL >= 3.x		* MySQL >= 4.x
	* BLAST, InterPRO, HMMer, GLIMMER, Critica, ... (please see the list from the GenDB wiki section for details, the more tools, the better your annotations)		* BLAST, InterPRO, HMMer, GLIMMER, Critica, ... (please see the list from the GenDB wiki section for details, the more tools, the better your annotations)
	* Databases: EMBL, TrEMBL, UniProt, InterPro, Swissprot, KEGG, COG, GO, ...		* Databases: EMBL, TrEMBL, UniProt, InterPro, Swissprot, KEGG, COG, GO, ...

imported>AlexanderGoesmann at 21:23, 8 February 2005

2005-02-08T21:23:10Z

← Older revision		Revision as of 23:23, 8 February 2005
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	* Perl >= 5.8.3 (please see the Perl bundle file on the GenDB ftp download site)		* Perl >= 5.8.3 (please see the Perl bundle file on the GenDB ftp download site)
	You will need to install a number of Perl modules, e.g. XML/DOM.pm,		You will need to install a number of Perl modules, e.g. XML/DOM.pm, Config::[[IniFiles]]
	* BioPerl >= 1.4		* BioPerl >= 1.4
	* Apache 2 (mod_perl_2, ...)		* Apache 2 (mod_perl_2, ...)

imported>AlexanderGoesmann at 21:16, 8 February 2005

2005-02-08T21:16:44Z

← Older revision		Revision as of 23:16, 8 February 2005
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	* Perl >= 5.8.3 (please see the Perl bundle file on the GenDB ftp download site)		* Perl >= 5.8.3 (please see the Perl bundle file on the GenDB ftp download site)
			You will need to install a number of Perl modules, e.g. XML/DOM.pm,
	* BioPerl >= 1.4		* BioPerl >= 1.4
	* Apache 2 (mod_perl_2, ...)		* Apache 2 (mod_perl_2, ...)

imported>AlexanderGoesmann at 11:40, 22 November 2004

2004-11-22T11:40:50Z

← Older revision		Revision as of 13:40, 22 November 2004
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	= GenDB Dependencies and Requirements =		= GenDB Dependencies and Requirements =

	To install GenDB you need at least the following software installed on your Linux/UNIX system:		We run GenDB on a cluster of >= 350 CPUs. A genome of 5MB will take about a day to be annotated completely automatically, depending on the number of tools and databases, a serious amount of CPUs is required. To install GenDB you need at least the following software installed on your Linux/UNIX system:

	* Perl >= 5.8.3 (please see the Perl bundle file on the GenDB ftp download site)		* Perl >= 5.8.3 (please see the Perl bundle file on the GenDB ftp download site)

imported>AlexanderGoesmann at 11:30, 22 November 2004

2004-11-22T11:30:14Z

← Older revision		Revision as of 13:30, 22 November 2004
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	To install GenDB you need at least the following software installed on your Linux/UNIX system:		To install GenDB you need at least the following software installed on your Linux/UNIX system:

	* Perl >= 5.8.3 (please see the bundle file ~~from~~ the GenDB ~~Project Web Pages~~)		* Perl >= 5.8.3 (please see the Perl bundle file on the GenDB ftp download site)
	* [[BioPerl]] >= 1.4		* BioPerl >= 1.4
	* Apache 2 (mod_perl_2, ...)		* Apache 2 (mod_perl_2, ...)
	* Sun Grid Engine >= 6.0		* Sun Grid Engine >= 6.0
	* either a local sequence retrieval system or access to a remote system (e.g. SRS)		* either a local sequence retrieval system or access to a remote system (e.g. SRS)
	* MySQL >= 3.x		* MySQL >= 3.x
	* BLAST, InterPRO, HMMer, GLIMMER		* BLAST, InterPRO, HMMer, GLIMMER, Critica, ... (please see the list from the GenDB wiki section for details, the more tools, the better your annotations)
			* Databases: EMBL, TrEMBL, UniProt, InterPro, Swissprot, KEGG, COG, GO, ...
			* for the GUI interface:
			** Gtk 1.2.10 (more or less complete, 2.x will not work)
			** Gnome 1.4 (including the Gnome Canvas, 2.x will not work )
			** perl-gtk and bindings to Gnome (see http://gtk.org)

imported>AlexanderGoesmann at 09:58, 22 November 2004

2004-11-22T09:58:25Z

← Older revision	Revision as of 11:58, 22 November 2004
(No difference)

Unknown user at 00:00, 1 January 1970

1970-01-01T00:00:00Z

New page

__NOTOC__
= GenDB Dependencies and Requirements =

To install GenDB you need at least the following software installed on your Linux/UNIX system:

* Perl >= 5.8.3 (please see the bundle file from the GenDB Project Web Pages)
* [[BioPerl]] >= 1.4
* Apache 2 (mod_perl_2, ...)
* Sun Grid Engine >= 6.0
* either a local sequence retrieval system or access to a remote system (e.g. SRS)
* MySQL >= 3.x
* BLAST, InterPRO, HMMer, GLIMMER