GenDBWiki/CoreDocumentation/AdditionalScripts - Revision history

Agoesman at 19:23, 29 October 2011

2011-10-29T19:23:26Z

← Older revision		Revision as of 21:23, 29 October 2011
Line 6:		Line 6:
	{{Warning}} All scripts are used on your own risk, so have your backup prepared for the worst case!		{{Warning}} All scripts are used on your own risk, so have your backup prepared for the worst case!

	The scripts are part of the GenDB distribution and thus located in the `'gendb/share/exec/'` directory of your current GenDB environment. Execute all scripts from the `'gendb/bin/'` directory using the `'gendb_start'` wrapper script. Executing a script without any arguments gives a detailed usage message where all available options are explained.		The scripts are part of the GenDB distribution and thus located in the <tt>'gendb/share/exec/'</tt> directory of your current GenDB environment. Execute all scripts from the <tt>'gendb/bin/'</tt> directory using the <tt>'gendb_start'</tt> wrapper script. Executing a script without any arguments gives a detailed usage message where all available options are explained.

	* <tt>add_annotator.pl</tt> - This script can be used for adding a human annotator to a GenDB project database. Usually this is already done automatically by the GPMS whenever a new member is added to a project as an annotator.		* <tt>add_annotator.pl</tt> - This script can be used for adding a human annotator to a GenDB project database. Usually this is already done automatically by the GPMS whenever a new member is added to a project as an annotator.

Agoesman at 19:22, 29 October 2011

2011-10-29T19:22:00Z

← Older revision		Revision as of 21:22, 29 October 2011
Line 4:		Line 4:
	The following list contains some Perl scripts that were implemented for some general tasks involved in maintaining and working with the GenDB system. All scripts are developed and maintained by the GenDB core development team but before applying a script to your own projects you should always read the documentation and probably also have a look at the source code.		The following list contains some Perl scripts that were implemented for some general tasks involved in maintaining and working with the GenDB system. All scripts are developed and maintained by the GenDB core development team but before applying a script to your own projects you should always read the documentation and probably also have a look at the source code.

	~~/!\~~ All scripts are used on your own risk, so have your backup prepared for the worst case! ~~/!\~~		{{Warning}} All scripts are used on your own risk, so have your backup prepared for the worst case!

	The scripts are part of the GenDB distribution and thus located in the `'gendb/share/exec/'` directory of your current GenDB environment. Execute all scripts from the `'gendb/bin/'` directory using the `'gendb_start'` wrapper script. Executing a script without any arguments gives a detailed usage message where all available options are explained.		The scripts are part of the GenDB distribution and thus located in the `'gendb/share/exec/'` directory of your current GenDB environment. Execute all scripts from the `'gendb/bin/'` directory using the `'gendb_start'` wrapper script. Executing a script without any arguments gives a detailed usage message where all available options are explained.

	* `add_annotator.pl` - This script can be used for adding a human annotator to a GenDB project database. Usually this is already done automatically by the GPMS whenever a new member is added to a project as an annotator.		* <tt>add_annotator.pl</tt> - This script can be used for adding a human annotator to a GenDB project database. Usually this is already done automatically by the GPMS whenever a new member is added to a project as an annotator.
	* `cleanup_database.pl` - This script checks a number of GenDB objects for consistency. Objects with illegal references e.g. to already deleted objects are removed and deleted automatically.		* <tt>cleanup_database.pl</tt> - This script checks a number of GenDB objects for consistency. Objects with illegal references e.g. to already deleted objects are removed and deleted automatically.
	* `optimize_tables.pl` - Use this script after larger database operations like computing several tools in order to optimize all tables automatically.		* <tt>optimize_tables.pl</tt> - Use this script after larger database operations like computing several tools in order to optimize all tables automatically.
	* `set_user_config.pl` - A default user configuration can be set for an existing GenDB user account with this script.		* <tt>set_user_config.pl</tt> - A default user configuration can be set for an existing GenDB user account with this script.

Admin: 6 revisions

2011-10-26T06:16:11Z

6 revisions

← Older revision	Revision as of 08:16, 26 October 2011
(No difference)

imported>AlexanderGoesmann at 08:09, 17 November 2004

2004-11-17T08:09:38Z

← Older revision		Revision as of 10:09, 17 November 2004
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	The scripts are part of the GenDB distribution and thus located in the `'gendb/share/exec/'` directory of your current GenDB environment. Execute all scripts from the `'gendb/bin/'` directory using the `'gendb_start'` wrapper script. Executing a script without any arguments gives a detailed usage message where all available options are explained.		The scripts are part of the GenDB distribution and thus located in the `'gendb/share/exec/'` directory of your current GenDB environment. Execute all scripts from the `'gendb/bin/'` directory using the `'gendb_start'` wrapper script. Executing a script without any arguments gives a detailed usage message where all available options are explained.

	* `add_annotator.pl` - This script can be used for adding a human annotator to a GenDB project database. Usually this is already done automatically by the GPMS.		* `add_annotator.pl` - This script can be used for adding a human annotator to a GenDB project database. Usually this is already done automatically by the GPMS whenever a new member is added to a project as an annotator.
	* `cleanup_database.pl` - This script checks a number of GenDB objects for consistency. Objects with illegal references e.g. to already deleted objects are removed and deleted automatically.		* `cleanup_database.pl` - This script checks a number of GenDB objects for consistency. Objects with illegal references e.g. to already deleted objects are removed and deleted automatically.
	* `optimize_tables.pl` - Use this script after larger database operations like computing several tools in order to optimize all tables automatically.		* `optimize_tables.pl` - Use this script after larger database operations like computing several tools in order to optimize all tables automatically.
	* `set_user_config.pl` - A default user configuration can be set for an existing GenDB user account with this script.		* `set_user_config.pl` - A default user configuration can be set for an existing GenDB user account with this script.

imported>AlexanderGoesmann at 08:08, 17 November 2004

2004-11-17T08:08:19Z

← Older revision		Revision as of 10:08, 17 November 2004
Line 8:		Line 8:
	The scripts are part of the GenDB distribution and thus located in the `'gendb/share/exec/'` directory of your current GenDB environment. Execute all scripts from the `'gendb/bin/'` directory using the `'gendb_start'` wrapper script. Executing a script without any arguments gives a detailed usage message where all available options are explained.		The scripts are part of the GenDB distribution and thus located in the `'gendb/share/exec/'` directory of your current GenDB environment. Execute all scripts from the `'gendb/bin/'` directory using the `'gendb_start'` wrapper script. Executing a script without any arguments gives a detailed usage message where all available options are explained.

	* ''add_annotator.pl'' - This script can be used for adding a human annotator to a GenDB project database. Usually this is already done automatically by the GPMS.		* `add_annotator.pl` - This script can be used for adding a human annotator to a GenDB project database. Usually this is already done automatically by the GPMS.
	* ''cleanup_database.pl'' - This script checks a number of GenDB objects for consistency. Objects with illegal references e.g. to already deleted objects are removed and deleted automatically.		* `cleanup_database.pl` - This script checks a number of GenDB objects for consistency. Objects with illegal references e.g. to already deleted objects are removed and deleted automatically.
	* ''optimize_tables.pl'' - Use this script after larger database operations like computing several tools in order to optimize all tables automatically.		* `optimize_tables.pl` - Use this script after larger database operations like computing several tools in order to optimize all tables automatically.
	* ''set_user_config.pl'' - A default user configuration can be ~~transferred to a~~ GenDB user account with this script.		* `set_user_config.pl` - A default user configuration can be set for an existing GenDB user account with this script.

imported>AlexanderGoesmann at 07:47, 17 November 2004

2004-11-17T07:47:36Z

← Older revision		Revision as of 09:47, 17 November 2004
Line 6:		Line 6:
	/!\ All scripts are used on your own risk, so have your backup prepared for the worst case! /!\		/!\ All scripts are used on your own risk, so have your backup prepared for the worst case! /!\

	The scripts are part of the GenDB distribution and thus located in the 'gendb/share/exec/' directory of your current GenDB environment. Execute all scripts from the `'gendb/bin/'` directory using the 'gendb_start' wrapper script. Executing a script without any arguments gives a detailed usage message where all available options are explained.		The scripts are part of the GenDB distribution and thus located in the `'gendb/share/exec/'` directory of your current GenDB environment. Execute all scripts from the `'gendb/bin/'` directory using the `'gendb_start'` wrapper script. Executing a script without any arguments gives a detailed usage message where all available options are explained.

	* ''add_annotator.pl'' - This script can be used for adding a human annotator to a GenDB project database. Usually this is already done automatically by the GPMS.		* ''add_annotator.pl'' - This script can be used for adding a human annotator to a GenDB project database. Usually this is already done automatically by the GPMS.

imported>AlexanderGoesmann at 07:44, 17 November 2004

2004-11-17T07:44:46Z

← Older revision		Revision as of 09:44, 17 November 2004
Line 4:		Line 4:
	The following list contains some Perl scripts that were implemented for some general tasks involved in maintaining and working with the GenDB system. All scripts are developed and maintained by the GenDB core development team but before applying a script to your own projects you should always read the documentation and probably also have a look at the source code.		The following list contains some Perl scripts that were implemented for some general tasks involved in maintaining and working with the GenDB system. All scripts are developed and maintained by the GenDB core development team but before applying a script to your own projects you should always read the documentation and probably also have a look at the source code.

	All scripts are used on your own risk, so have your backup prepared for the worst case ~~;-)~~		/!\ All scripts are used on your own risk, so have your backup prepared for the worst case! /!\

	The scripts are part of the GenDB distribution and thus located in the 'gendb/share/exec/' directory of your current GenDB environment. Execute all scripts from the `'gendb/bin/'` directory using the 'gendb_start' wrapper script. Executing a script without any arguments gives a detailed usage message where all available options are explained.		The scripts are part of the GenDB distribution and thus located in the 'gendb/share/exec/' directory of your current GenDB environment. Execute all scripts from the `'gendb/bin/'` directory using the 'gendb_start' wrapper script. Executing a script without any arguments gives a detailed usage message where all available options are explained.

imported>AlexanderGoesmann at 07:42, 17 November 2004

2004-11-17T07:42:26Z

← Older revision		Revision as of 09:42, 17 November 2004
Line 2:		Line 2:
	= Additional GenDB CORE Scripts =		= Additional GenDB CORE Scripts =

	The following list contains some Perl scripts that were implemented for some general tasks involved in maintaining and working with the !GenDB system. All scripts are developed and maintained by the !GenDB core development team but before applying a script to your own projects you should always read the documentation and probably also have a look at the source code.		The following list contains some Perl scripts that were implemented for some general tasks involved in maintaining and working with the GenDB system. All scripts are developed and maintained by the GenDB core development team but before applying a script to your own projects you should always read the documentation and probably also have a look at the source code.

	All scripts are used on your own risk, so have your backup prepared for the worst case ;-)		All scripts are used on your own risk, so have your backup prepared for the worst case ;-)

Unknown user at 00:00, 1 January 1970

1970-01-01T00:00:00Z

New page

__NOTOC__
= Additional GenDB CORE Scripts =

The following list contains some Perl scripts that were implemented for some general tasks involved in maintaining and working with the !GenDB system. All scripts are developed and maintained by the !GenDB core development team but before applying a script to your own projects you should always read the documentation and probably also have a look at the source code.

All scripts are used on your own risk, so have your backup prepared for the worst case ;-)

The scripts are part of the GenDB distribution and thus located in the 'gendb/share/exec/' directory of your current GenDB environment. Execute all scripts from the `'gendb/bin/'` directory using the 'gendb_start' wrapper script. Executing a script without any arguments gives a detailed usage message where all available options are explained.

* ''add_annotator.pl'' - This script can be used for adding a human annotator to a GenDB project database. Usually this is already done automatically by the GPMS.
* ''cleanup_database.pl'' - This script checks a number of GenDB objects for consistency. Objects with illegal references e.g. to already deleted objects are removed and deleted automatically.
* ''optimize_tables.pl'' - Use this script after larger database operations like computing several tools in order to optimize all tables automatically.
* ''set_user_config.pl'' - A default user configuration can be transferred to a GenDB user account with this script.