GenDBWiki/DeveloperDocumentation/PersonalWebServer - Revision history

Admin: 6 revisions

2011-10-26T06:16:41Z

6 revisions

← Older revision	Revision as of 08:16, 26 October 2011
(No difference)

imported>AlexanderGoesmann at 08:21, 29 June 2005

2005-06-29T08:21:13Z

@@ Line 1: / Line 1: @@
 __NOTOC__
-Here we describe how to set up a personal GenDB Webserver in the [[CeBiTec]] environment.
+= Setting up your personal GenDB web server at [[CeBiTec]] =
-The following documentation relates to the Head version in the CVS
+The content of this page was moved to the [http://www.cebitec.uni-bielefeld.de/groups/brf/internal/AdminInfoGenDB/PersonalWebServer internal Wiki] since all descriptions provided here do only apply for setting up an internal GenDB web server at the CeBiTec.

imported>HeikoNeuweger at 14:26, 4 March 2005

2005-03-04T14:26:32Z

← Older revision		Revision as of 16:26, 4 March 2005
Line 37:		Line 37:


	PORT defines the port your webserver process will wait for requests.		PORT defines the port where your webserver process will wait for requests (here 9000 is an example which is to be substituted by a port-number on your machine).
	Make sure this port is not used yet. The CVS_SUBDIR states the directory relative to your home where the bioinfo ~~subdir~~ can be found.		Make sure this port is not used yet. The CVS_SUBDIR states the directory relative to your home-directory where the bioinfo-subdirectory can be found.
	In ~~thia~~ example ~~ist~~ CVS_HEAD		In this example it is CVS_HEAD.

	~~use~~ a remote shell on a host like bane, hook or trillian		Use a remote shell on a host like bane, hook or trillian

	<pre><nowiki>		<pre><nowiki>
Line 69:		Line 69:


	and ~~hopefully~~ you will see the login dialog of gendb 2.2		and you will see the login dialog of gendb 2.2

imported>HeikoNeuweger at 14:19, 4 March 2005

2005-03-04T14:19:48Z

← Older revision		Revision as of 16:19, 4 March 2005
Line 45:		Line 45:
	<pre><nowiki>		<pre><nowiki>
	rsh bane		rsh bane

	</nowiki></pre>		</nowiki></pre>

Line 59:		Line 58:


	this will start an httpd process on that machine ~~tha~~ listens on the port		this will start an httpd process on that machine that listens on the port
	you provided in the user_conf.sh file.		you provided in the user_conf.sh file.

Line 77:		Line 76:
	./apache2 stop		./apache2 stop
	</nowiki></pre>		</nowiki></pre>


	will stop the webserver. Do not forget to restart the webserver if Perl		will stop the webserver. Do not forget to restart the webserver if Perl
	Modules are updated. cgi scripts and templates will get updated automatically		Modules are updated. Chnages in cgi scripts and templates will get updated automatically

	if you made changes to cgi.template file in gendb_web/share/cgi_bin do not forget		If you made changes to cgi.template file in gendb_web/share/cgi_bin do not forget
	to process these files with the process_templates script		to process these files with the process_templates script

Line 89:		Line 89:
	./process_templates ../share/cgi-bin/		./process_templates ../share/cgi-bin/
	</nowiki></pre>		</nowiki></pre>


			to see what errors are produced check the error logs in
			~/CVS_HEAD/bioinfo/gendb_web/share/logs. A convenient way to
			analyze current errors is the use of tail -f <logfile>.
			Make sure you start tail on the same host that the httpd process runs on,
			otherwise delayed results are to be expected


			<pre><nowiki>
			rsh bane
			cd ~/CVS_HEAD/bioinfo/gendb_web/share/logs
			tail -f gendb2.errors

imported>HeikoNeuweger at 14:12, 4 March 2005

2005-03-04T14:12:55Z

@@ Line 36: / Line 36: @@
 </nowiki></pre>
 use a remote shell on a host like bane, hook or trillian
@@ Line 67: / Line 71: @@
 and hopefully you will see the login dialog of gendb 2.2

imported>HeikoNeuweger at 14:03, 4 March 2005

2005-03-04T14:03:31Z

← Older revision	Revision as of 16:03, 4 March 2005
(No difference)

Unknown user at 00:00, 1 January 1970

1970-01-01T00:00:00Z

New page

__NOTOC__
Here we describe how to set up a personal GenDB Webserver in the [[CeBiTec]] environment.

The following documentation relates to the Head version in the CVS

create a CVS direcory in your home directory e.g. 'CVS_HEAD'

<pre><nowiki>
cd
mkdir CVS_HEAD
cd CVS_HEAD
</nowiki></pre>

check out the following modules from the CVS
make sure your CVS_ROOT and CVS_RSH are set

<pre><nowiki>
cvs co bioinfo/common
cvs co bioinfo/gendb
cvs co bioinfo/gendb_web
cvs co bioinfo/projectmanagement
cvs co bioinfo/GOPArc
cvs co bioinfo/BRIDGE
</nowiki></pre>

create a user_conf.sh file in the CVS_HEAD/bioinfo/gendb_web/share/www/
directory. This file must contain the two following lines

<pre><nowiki>
PORT=9000
CVS_SUBDIR=CVS_HEAD
</nowiki></pre>

use a remote shell on a host like bane, hook or trillian

<pre><nowiki>
rsh bane

</nowiki></pre>

change to the gendb_web directory on that host and
run the apache2 script with param start

<pre><nowiki>
cd ~/CVS_HEAD/bioinfo/gendb_web
./apache2 start
</nowiki></pre>

this will start an httpd process on that machine tha listens on the port
you provided in the user_conf.sh file.

direct your browser to

<pre><nowiki>
http://bane:9000
</nowiki></pre>

and hopefully you will see the login dialog of gendb 2.2