GenDBWiki/DeveloperDocumentation/UseTheSource - Revision history

Agoesman at 16:11, 31 October 2011

2011-10-31T16:11:34Z

← Older revision		Revision as of 18:11, 31 October 2011
Line 7:		Line 7:

	{\| border="1" cellpadding="2" cellspacing="0"		{\| border="1" cellpadding="2" cellspacing="0"
	\| `gendb/bin/`		\| <tt>gendb/bin/</tt>
	\| only binaries and executable shell scripts like the GenDB start up wrapper		\| only binaries and executable shell scripts like the GenDB start up wrapper
	\|-		\|-
	\| `gendb/share/`		\| <tt>gendb/share/</tt>
	\| directory for most of the GenDB sources		\| directory for most of the GenDB sources
	\|-		\|-
	\| `gendb/share/exec/`		\| <tt>gendb/share/exec/</tt>
	\| executable Perl scripts etc		\| executable Perl scripts etc
	\|-		\|-
	\| `gendb/share/data/`		\| <tt>gendb/share/data/</tt>
	\| default directory for all kinds of data files, e.g. the GenDB logo and splash screen images		\| default directory for all kinds of data files, e.g. the GenDB logo and splash screen images
	\|-		\|-
	\| `gendb/share/doc/`		\| <tt>gendb/share/doc/</tt>
	\| directory that contains the GenDB documentation		\| directory that contains the GenDB documentation
	\|-		\|-
	\| `gendb/share/perl/`		\| <tt>gendb/share/perl/</tt>
	\| all Perl sources of the GenDB system		\| all Perl sources of the GenDB system
	\|-		\|-
	\| `gendb/share/perl/GENDB/`		\| <tt>gendb/share/perl/GENDB/</tt>
	\| the GenDB core library		\| the GenDB core library
	\|-		\|-
	\| `gendb/share/perl/GENDB/Common/`		\| <tt>gendb/share/perl/GENDB/Common/</tt>
	\| the GenDB core library		\| the GenDB core library
	\|-		\|-
	\| `gendb/share/perl/GENDB/DB/`		\| <tt>gendb/share/perl/GENDB/DB/</tt>
	\| a `.pod` file for each class of the database schema automatically created by O2DBI		\| a <tt>.pod</tt> file for each class of the database schema automatically created by O2DBI
	\|-		\|-
	\| `gendb/share/perl/GENDB/DB_Server/`		\| <tt>gendb/share/perl/GENDB/DB_Server/</tt>
	\| the GenDB core server library; here you can find the manually implemented extensions for each class of the database schema (in several other subdirectories where subclasses exist)		\| the GenDB core server library; here you can find the manually implemented extensions for each class of the database schema (in several other subdirectories where subclasses exist)
	\|-		\|-
	\| `gendb/share/perl/GENDB/Exporter/`		\| <tt>gendb/share/perl/GENDB/Exporter/</tt>
	\| some exporter modules written for the GenDB system, e.g. a FASTA or EMBL export library		\| some exporter modules written for the GenDB system, e.g. a FASTA or EMBL export library
	\|-		\|-
	\| `gendb/share/perl/GENDB/Importer/`		\| <tt>gendb/share/perl/GENDB/Importer/</tt>
	\| some importer modules written for the GenDB system, e.g. a FASTA or EMBL import library		\| some importer modules written for the GenDB system, e.g. a FASTA or EMBL import library
	\|-		\|-
	\| `gendb/share/perl/GENDB/Tools`		\| <tt>gendb/share/perl/GENDB/Tools</tt>
	\| some common library functions implemented for frequently used tools like Blast which are utilized by several classes		\| some common library functions implemented for frequently used tools like Blast which are utilized by several classes
	\|-		\|-
	\| `gendb/share/perl/GENDB/Wizard`		\| <tt>gendb/share/perl/GENDB/Wizard</tt>
	\| some wizards that were implemented for more complex tasks, e.g. tool creation or job submission		\| some wizards that were implemented for more complex tasks, e.g. tool creation or job submission
	\|-		\|-
	\| `gendb/src`		\| <tt>gendb/src</tt>
	\| contains only some raw sources		\| contains only some raw sources
	\|-		\|-
	\| `gendb/src/dbschema`		\| <tt>gendb/src/dbschema</tt>
	\| the GenDB O2DBI database schema		\| the GenDB O2DBI database schema
	\|}		\|}

Admin: 6 revisions

2011-10-26T06:15:06Z

6 revisions

← Older revision	Revision as of 08:15, 26 October 2011
(No difference)

imported>AlexanderGoesmann at 08:45, 29 June 2005

2005-06-29T08:45:47Z

Show changes

imported>AlexanderLenhardt at 12:27, 20 December 2004

2004-12-20T12:27:27Z

← Older revision		Revision as of 14:27, 20 December 2004
Line 237:		Line 237:
	* DB_Server/Tool/Function/ bl, clex		* DB_Server/Tool/Function/ bl, clex
	** + Bidirectional.pm		** + Bidirectional.pm
	** - Blast.pm		** + Blast.pm
	** - CoBias.pm		** + CoBias.pm
	** + Coils.pm		** + Coils.pm
	** + Garnier.pm		** + Garnier.pm
	** + MMPfam_ORF_Search.pm		** + MMPfam_ORF_Search.pm
	** - HMMPfam.pm		** + HMMPfam.pm
	** - HTH.pm		** + HTH.pm
	** - InterPRO.pm		** + InterPRO.pm
	** + iPSORT.pm		** + iPSORT.pm
	** + PatScan.pm		** + PatScan.pm
	** - PFScan.pm		** + PFScan.pm
	** + Predator.pm		** + Predator.pm
	** + Prof.pm		** + Prof.pm

imported>SebastianKonietzny at 18:29, 16 December 2004

2004-12-16T18:29:38Z

← Older revision		Revision as of 20:29, 16 December 2004
Line 7:		Line 7:

	{\| border="1" cellpadding="2" cellspacing="0"		{\| border="1" cellpadding="2" cellspacing="0"
	\| `gendb/bin`		\| `gendb/bin/`
	\| only binaries and executable shell scripts like the GenDB start up wrapper		\| only binaries and executable shell scripts like the GenDB start up wrapper
	\|-		\|-
Line 13:		Line 13:
	\| directory for most of the GenDB sources		\| directory for most of the GenDB sources
	\|-		\|-
	\| `gendb/share/exec`		\| `gendb/share/exec/`
	\| executable Perl scripts etc		\| executable Perl scripts etc
	\|-		\|-
	\| `gendb/share/data`		\| `gendb/share/data/`
	\| default directory for all kinds of data files, e.g. the GenDB logo and splash screen images		\| default directory for all kinds of data files, e.g. the GenDB logo and splash screen images
	\|-		\|-
	\| `gendb/share/doc`		\| `gendb/share/doc/`
	\| directory that contains the GenDB documentation		\| directory that contains the GenDB documentation
	\|-		\|-
	\| `gendb/share/perl`		\| `gendb/share/perl/`
	\| all Perl sources of the GenDB system		\| all Perl sources of the GenDB system
	\|-		\|-
	\| `gendb/share/perl/GENDB`		\| `gendb/share/perl/GENDB/`
	\| the GenDB core library		\| the GenDB core library
	\|-		\|-
	\| `gendb/share/perl/GENDB/Common`		\| `gendb/share/perl/GENDB/Common/`
	\| the GenDB core library		\| the GenDB core library
	\|-		\|-
	\| `gendb/share/perl/GENDB/DB`		\| `gendb/share/perl/GENDB/DB/`
	\| a `.pod` file for each class of the database schema automatically created by O2DBI		\| a `.pod` file for each class of the database schema automatically created by O2DBI
	\|-		\|-
	\| `gendb/share/perl/GENDB/DB_Server`		\| `gendb/share/perl/GENDB/DB_Server/`
	\| the GenDB core server library; here you can find the manually implemented extensions for each class of the database schema (in several other subdirectories where subclasses exist)		\| the GenDB core server library; here you can find the manually implemented extensions for each class of the database schema (in several other subdirectories where subclasses exist)
	\|-		\|-
	\| `gendb/share/perl/GENDB/Exporter`		\| `gendb/share/perl/GENDB/Exporter/`
	\| some exporter modules written for the GenDB system, e.g. a FASTA or EMBL export library		\| some exporter modules written for the GenDB system, e.g. a FASTA or EMBL export library
	\|-		\|-
	\| `gendb/share/perl/GENDB/Importer`		\| `gendb/share/perl/GENDB/Importer/`
	\| some importer modules written for the GenDB system, e.g. a FASTA or EMBL import library		\| some importer modules written for the GenDB system, e.g. a FASTA or EMBL import library
	\|-		\|-

imported>AlexanderGoesmann at 17:53, 13 December 2004

2004-12-13T17:53:22Z

Show changes

imported>AlexanderGoesmann at 09:41, 22 November 2004

2004-11-22T09:41:18Z

← Older revision		Revision as of 11:41, 22 November 2004
Line 2:		Line 2:
	= Working with the GenDB Sources (Where to find what!) =		= Working with the GenDB Sources (Where to find what!) =

	The list below briefly describes the structure of the !GenDB repository and the content of each directory. If you are programming within the !GenDB environment please respect the existing directory structure.		The list below briefly describes the structure of the GenDB repository and the content of each directory. If you are programming within the GenDB environment please respect the existing directory structure.

	== The GenDB Core Sources ==		== The GenDB Core Sources ==
Line 8:		Line 8:
	{\| border="1" cellpadding="2" cellspacing="0"		{\| border="1" cellpadding="2" cellspacing="0"
	\| `gendb/bin`		\| `gendb/bin`
	\| only binaries and executable shell scripts like the !GenDB start up wrapper		\| only binaries and executable shell scripts like the GenDB start up wrapper
	\|-		\|-
	\| `gendb/share/`		\| `gendb/share/`
	\| directory for most of the !GenDB sources		\| directory for most of the GenDB sources
	\|-		\|-
	\| `gendb/share/exec`		\| `gendb/share/exec`
Line 17:		Line 17:
	\|-		\|-
	\| `gendb/share/data`		\| `gendb/share/data`
	\| default directory for all kinds of data files, e.g. the !GenDB logo and splash screen images		\| default directory for all kinds of data files, e.g. the GenDB logo and splash screen images
	\|-		\|-
	\| `gendb/share/doc`		\| `gendb/share/doc`
	\| directory that contains the !GenDB documentation		\| directory that contains the GenDB documentation
	\|-		\|-
	\| `gendb/share/perl`		\| `gendb/share/perl`
	\| all Perl sources of the !GenDB system		\| all Perl sources of the GenDB system
	\|-		\|-
	\| `gendb/share/perl/GENDB`		\| `gendb/share/perl/GENDB`
	\| the !GenDB core library		\| the GenDB core library
	\|-		\|-
	\| `gendb/share/perl/GENDB/Common`		\| `gendb/share/perl/GENDB/Common`
	\| the !GenDB core library		\| the GenDB core library
	\|-		\|-
	\| `gendb/share/perl/GENDB/DB`		\| `gendb/share/perl/GENDB/DB`
	\| a `.pod` file for each class of the database schema automatically created by !O2DBI		\| a `.pod` file for each class of the database schema automatically created by O2DBI
	\|-		\|-
	\| `gendb/share/perl/GENDB/DB_Server`		\| `gendb/share/perl/GENDB/DB_Server`
	\| the !GenDB core server library; here you can find the manually implemented extensions for each class of the database schema (in several other subdirectories where subclasses exist)		\| the GenDB core server library; here you can find the manually implemented extensions for each class of the database schema (in several other subdirectories where subclasses exist)
	\|-		\|-
	\| `gendb/share/perl/GENDB/Exporter`		\| `gendb/share/perl/GENDB/Exporter`
	\| some exporter modules written for the !GenDB system, e.g. a !FASTA or !EMBL export library		\| some exporter modules written for the GenDB system, e.g. a FASTA or EMBL export library
	\|-		\|-
	\| `gendb/share/perl/GENDB/Importer`		\| `gendb/share/perl/GENDB/Importer`
	\| some importer modules written for the !GenDB system, e.g. a !FASTA or !EMBL import library		\| some importer modules written for the GenDB system, e.g. a FASTA or EMBL import library
	\|-		\|-
	\| `gendb/share/perl/GENDB/Tools`		\| `gendb/share/perl/GENDB/Tools`
Line 53:		Line 53:
	\|-		\|-
	\| `gendb/src/dbschema`		\| `gendb/src/dbschema`
	\| the !GenDB !O2DBI database schema		\| the GenDB O2DBI database schema
	\|}		\|}

Unknown user at 00:00, 1 January 1970

1970-01-01T00:00:00Z

New page

__NOTOC__
= Working with the GenDB Sources (Where to find what!) =

The list below briefly describes the structure of the !GenDB repository and the content of each directory. If you are programming within the !GenDB environment please respect the existing directory structure.

== The GenDB Core Sources ==

{| border="1" cellpadding="2" cellspacing="0"
| `gendb/bin`
| only binaries and executable shell scripts like the !GenDB start up wrapper
|-
| `gendb/share/`
| directory for most of the !GenDB sources
|-
| `gendb/share/exec`
| executable Perl scripts etc
|-
| `gendb/share/data`
| default directory for all kinds of data files, e.g. the !GenDB logo and splash screen images
|-
| `gendb/share/doc`
| directory that contains the !GenDB documentation
|-
| `gendb/share/perl`
| all Perl sources of the !GenDB system
|-
| `gendb/share/perl/GENDB`
| the !GenDB core library
|-
| `gendb/share/perl/GENDB/Common`
| the !GenDB core library
|-
| `gendb/share/perl/GENDB/DB`
| a `.pod` file for each class of the database schema automatically created by !O2DBI
|-
| `gendb/share/perl/GENDB/DB_Server`
| the !GenDB core server library; here you can find the manually implemented extensions for each class of the database schema (in several other subdirectories where subclasses exist)
|-
| `gendb/share/perl/GENDB/Exporter`
| some exporter modules written for the !GenDB system, e.g. a !FASTA or !EMBL export library
|-
| `gendb/share/perl/GENDB/Importer`
| some importer modules written for the !GenDB system, e.g. a !FASTA or !EMBL import library
|-
| `gendb/share/perl/GENDB/Tools`
| some common library functions implemented for frequently used tools like Blast which are utilized by several classes
|-
| `gendb/share/perl/GENDB/Wizard`
| some wizards that were implemented for more complex tasks, e.g. tool creation or job submission
|-
| `gendb/src`
| contains only some raw sources
|-
| `gendb/src/dbschema`
| the !GenDB !O2DBI database schema
|}

== The GenDB Web Sources ==

add some text here

== The GenDB GUI Sources ==

add some text here