GenDBWiki/WebDocumentation/DialogWindows/CircularPlot - Revision history

Agoesman at 10:57, 22 November 2011

2011-11-22T10:57:10Z

← Older revision		Revision as of 12:57, 22 November 2011
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	For the circles displayed, the radius can be modified using the 'Radius' fields.		For the circles displayed, the radius can be modified using the 'Radius' fields.

			For higher graphic resolution select 'SVG' output.

			[[File:CircularPlot.png\|\|Screenshot of the Circular Genome Plot]]
	~~attachment~~:~~circularplot~~.png

Agoesman at 19:58, 15 November 2011

2011-11-15T19:58:38Z

← Older revision		Revision as of 21:58, 15 November 2011
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	The Circular Plot shows all genes of both strands in a circular view. In this example, the colors		The Circular Plot shows all genes of both strands in a circular view. In this example, the colors
	refer to the reading frames of the regions as referred to in the legend in the lower left corner.		refer to the reading frames of the regions as referred to in the legend in the lower left corner.
	If you click on a region, the [~~wiki:~~GenDBWiki/WebDocumentation/MainViews/ContigView Contig View] will jump to that position.		If you click on a region, the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|Contig View]] will jump to that position.

	On the upper right corner a number of options can be selected. If the checkbox 'Up- / Downstream only'		On the upper right corner a number of options can be selected. If the checkbox 'Up- / Downstream only'
Line 10:		Line 10:

	If the checkbox 'Show annotation state' is selected, the colors do not refer to the reading frame but		If the checkbox 'Show annotation state' is selected, the colors do not refer to the reading frame but
	the annotation status of the regions. Here, it can be selected if the annotation status should		the annotation status of the regions. Here, it can be selected if the annotation status should
	refer to the functional or the regional annotation		refer to the functional or the regional annotation
	(see [~~wiki:~~GenDBWiki/TermsAndConcepts/GenDBAnnotationWorkflow annotation concepts]).		(see [[GenDBWiki/TermsAndConcepts/GenDBAnnotationWorkflow\|annotation concepts]]).

	For the circles displayed, the radius can be modified using the 'Radius' fields.		For the circles displayed, the radius can be modified using the 'Radius' fields.

Agoesman: Created page with "= Circular Plot = The Circular Plot shows all genes of both strands in a circular view. In this example, the colors refer to the reading frames of the regions as referred to in ..."

2011-11-11T20:52:13Z

Created page with "= Circular Plot = The Circular Plot shows all genes of both strands in a circular view. In this example, the colors refer to the reading frames of the regions as referred to in ..."

New page

= Circular Plot =

The Circular Plot shows all genes of both strands in a circular view. In this example, the colors
refer to the reading frames of the regions as referred to in the legend in the lower left corner.
If you click on a region, the [wiki:GenDBWiki/WebDocumentation/MainViews/ContigView Contig View] will jump to that position.

On the upper right corner a number of options can be selected. If the checkbox 'Up- / Downstream only'
is not selected, each frame will be displayed in a single circle. In this example, the box is checked,
so that there is only one circle for the upstream and one for the downstream frames.

If the checkbox 'Show annotation state' is selected, the colors do not refer to the reading frame but
the annotation status of the regions. Here, it can be selected if the annotation status should
refer to the functional or the regional annotation
(see [wiki:GenDBWiki/TermsAndConcepts/GenDBAnnotationWorkflow annotation concepts]).

For the circles displayed, the radius can be modified using the 'Radius' fields.

attachment:circularplot.png