GenDBWiki/WebDocumentation/DialogWindows/ConfigDialog - Revision history

Agoesman at 20:57, 29 November 2011

2011-11-29T20:57:50Z

← Older revision		Revision as of 22:57, 29 November 2011
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	= The Configuration Dialog =		= The Configuration Dialog =

	The user settings for the complete GenDB web interface can be edited in this dialog. This includes colors, numbers of observations for different tools		The user settings for the complete GenDB web interface can be edited in this dialog. This includes colors, numbers of observations for different tools
	you want to view and many other things. The navigation is done by the six links at the beginning which represent the main menu of the !ConfigurationDialog.		you want to view and many other things. The navigation is done by the six links at the beginning which represent the main menu of the !ConfigurationDialog.
	These six menues are now shortly described.		These six menues are now shortly described.

	== CG-Plot ==		== GC-Plot ==

	~~attachment~~:~~config1~~.png		[[File:Config-GCPlot.png\|Screenshot of the GenDB GC Plot Configuration Dialog.]]

	== Observations ==		== Observations ==
Line 14:		Line 14:
	will be sorted by default		will be sorted by default

	~~attachment~~:~~config2~~.png		[[File:Config-Observations.png\|Screenshot of the GenDB Observations Configuration Dialog.]]

	== Tool results ==		== Tool results ==

	~~attachment~~:~~config3~~.png		[[File:Config-ToolResults.png\|Screenshot of the GenDB Tool Results Configuration Dialog.]]

	Define the number of observations for each tool/ tool class to		Define the number of observations for each tool/ tool class to
Line 32:		Line 32:
	== Contig View ==		== Contig View ==

	~~attachment~~:~~config4a~~.png		[[File:Config-ContigView.png\|Screenshot of the GenDB Contig View Configuration Dialog.]]

	This configuration tabsheet affects the colors and the way		This configuration tabsheet affects the colors and the way
Line 44:		Line 44:
	== Search Patterns ==		== Search Patterns ==

	~~attachment~~:~~config5~~.png		[[File:Config-SearchPatterns.png\|Screenshot of the GenDB Search Patterns Configuration Dialog.]]

	If you define a pattern here, the RBS finder will use it to		If you define a pattern here, the RBS finder will use it to
Line 51:		Line 51:
	== Preferences Management ==		== Preferences Management ==

	~~attachment~~:~~config6~~.png		[[File:Config-PrefManagement.png\|Screenshot of the GenDB Preferences Management Configuration Dialog.]]


	Download the current settings in a INI-formated		Download the current settings in a INI-formated
	textfile or revert to the default settings.		textfile or revert to the default settings.
	It is also possible to upload your own configuration files.		It is also possible to upload your own configuration files.

Agoesman: /* Contig View */

2011-11-15T20:00:46Z

Contig View

← Older revision		Revision as of 22:00, 15 November 2011
Line 34:		Line 34:
	attachment:config4a.png		attachment:config4a.png

	This configuration tabsheet affects the colors and the way		This configuration tabsheet affects the colors and the way
	regions are displayed in the [~~wiki:~~GenDBWiki/WebDocumentation/MainViews/ContigView Contig view].		regions are displayed in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|Contig view]].
	For every region type color, arrow and visibility can be specified. The way regions are colored		For every region type color, arrow and visibility can be specified. The way regions are colored
	depends on the selection:		depends on the selection:
	* region status: use the colors defined in the section Region Status. Each region will be filled according to its regional status		* region status: use the colors defined in the section Region Status. Each region will be filled according to its regional status
	* function status: use the colors defined in the section Function Status. Each region will be filled according to its functional status		* function status: use the colors defined in the section Function Status. Each region will be filled according to its functional status
	* region type: use the colors defined in the section Region Color.		* region type: use the colors defined in the section Region Color.

	== Search Patterns ==		== Search Patterns ==

Agoesman: /* Tool results */

2011-11-15T20:00:08Z

Tool results

← Older revision		Revision as of 22:00, 15 November 2011
Line 22:		Line 22:
	Define the number of observations for each tool/ tool class to		Define the number of observations for each tool/ tool class to
	be displayed. These settings will affect the way observations		be displayed. These settings will affect the way observations
	are displayed in the [~~wiki:~~GenDBWiki/WebDocumentation/DialogWindows/ObservationDialog Observation Dialog]		are displayed in the [[GenDBWiki/WebDocumentation/DialogWindows/ObservationDialog\|Observation Dialog]]

	Use the following convention:		Use the following convention:

	* -1 = show all		* -1 = show all
	* 0 = show none		* 0 = show none
	* >0 = show limited amount		* >0 = show limited amount

	== Contig View ==		== Contig View ==

Agoesman: Created page with "= The Configuration Dialog = The user settings for the complete GenDB web interface can be edited in this dialog. This includes colors, numbers of observations for different too..."

2011-11-11T20:59:55Z

Created page with "= The Configuration Dialog = The user settings for the complete GenDB web interface can be edited in this dialog. This includes colors, numbers of observations for different too..."

New page

= The Configuration Dialog =

The user settings for the complete GenDB web interface can be edited in this dialog. This includes colors, numbers of observations for different tools
you want to view and many other things. The navigation is done by the six links at the beginning which represent the main menu of the !ConfigurationDialog.
These six menues are now shortly described.

== CG-Plot ==

attachment:config1.png

== Observations ==

Define the colors for the five quality levels and the way observations
will be sorted by default

attachment:config2.png

== Tool results ==

attachment:config3.png

Define the number of observations for each tool/ tool class to
be displayed. These settings will affect the way observations
are displayed in the [wiki:GenDBWiki/WebDocumentation/DialogWindows/ObservationDialog Observation Dialog]

Use the following convention:

* -1 = show all
* 0 = show none
* >0 = show limited amount

== Contig View ==

attachment:config4a.png

This configuration tabsheet affects the colors and the way
regions are displayed in the [wiki:GenDBWiki/WebDocumentation/MainViews/ContigView Contig view].
For every region type color, arrow and visibility can be specified. The way regions are colored
depends on the selection:
* region status: use the colors defined in the section Region Status. Each region will be filled according to its regional status
* function status: use the colors defined in the section Function Status. Each region will be filled according to its functional status
* region type: use the colors defined in the section Region Color.

== Search Patterns ==

attachment:config5.png

If you define a pattern here, the RBS finder will use it to
detect ribosomal binding sites.

== Preferences Management ==

attachment:config6.png

Download the current settings in a INI-formated
textfile or revert to the default settings.
It is also possible to upload your own configuration files.