Agoesman at 10:42, 22 November 2011

2011-11-22T10:42:02Z

Agoesman: Created page with "= Observations Dialog = The Observations Dialog displays all computed tool results for a GenDB region in a table. In the first column a graphical representation of the part of t..."

2011-11-11T20:49:45Z

Created page with "= Observations Dialog = The Observations Dialog displays all computed tool results for a GenDB region in a table. In the first column a graphical representation of the part of t..."

New page

= Observations Dialog =

The Observations Dialog displays all computed tool results for a GenDB region in a table.
In the first column a graphical representation of the part of the region the observation
is related to is shown. Here, every observation seen is related to the complete region.

The second column contains an EValue for the observation. The EValue is available for
every BLAST-related tool and some others like e.g. TMHMM. In the third column the
GenDB tool name for the observation is shown. The name should include the software
tool the observation is created with and, e.g. for BLAST, the database which was
used for the observation. In the next column, there are web links to the used databases if possible.
The column 'Type' says if the tool worked on the DNA sequence or the amino acid sequence.
In the following column a description of the observation is shown. The last column
gives the user the possibility to annotate a region using a single observation as a template or
display a new popup window containing the complete tool result to have a closer look e.g. at
the alignment of a BLAST hit.

On top of the table there are some options about which observations should be shown and in what
order. You can sort the observations by Level, Score, Tool name, Start, Stop and Length.
The sorting order can be ascending or descending. There are 5 levels the observations of each
tools are classified into. You can select the maximal level up to which the observations shall
be shown. You can also assign a maximal number of observations you want to see, which is useful
if you have e.g. a slow internet connection.

After changing one of the options, you must click the button 'Sort observations' to make a change.

attachment:observationsdialog.png

← Older revision		Revision as of 12:42, 22 November 2011
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	is related to is shown. Here, every observation seen is related to the complete region.		is related to is shown. Here, every observation seen is related to the complete region.

	The second column contains an EValue for the observation. The EValue is available for		The second column contains an EValue for the observation. The EValue is available for
	every BLAST-related tool and some others like e.g. TMHMM. In the third column the		every BLAST-related tool and some others like e.g. TMHMM. In the third column the
	GenDB tool name for the observation is shown. The name should include the software		GenDB tool name for the observation is shown. The name should include the software
	tool the observation is created with and, e.g. for BLAST, the database which was		tool the observation is created with and, e.g. for BLAST, the database which was
	used for the observation. In the next column, there are web links to the used databases if possible.		used for the observation. In the next column, there are web links to the used databases if possible.
	The column 'Type' says if the tool worked on the DNA sequence or the amino acid sequence.		The column 'Type' says if the tool worked on the DNA sequence or the amino acid sequence.
	In the following column a description of the observation is shown. The last column		In the following column a description of the observation is shown. The last column
	gives the user the possibility to annotate a region using a single observation as a template or		gives the user the possibility to annotate a region using a single observation as a template or
	display a new popup window containing the complete tool result to have a closer look e.g. at		display a new popup window containing the complete tool result to have a closer look e.g. at
	the alignment of a BLAST hit.		the alignment of a BLAST hit.

	On top of the table there are some options about which observations should be shown and in what		On top of the table there are some options about which observations should be shown and in what
	order. You can sort the observations by Level, Score, Tool name, Start, Stop and Length.		order. You can sort the observations by Level, Score, Tool name, Start, Stop and Length.
	The sorting order can be ascending or descending. There are 5 levels the observations of each		The sorting order can be ascending or descending. There are 5 levels the observations of each
	tools are classified into. You can select the maximal level up to which the observations shall		tools are classified into. You can select the maximal level up to which the observations shall
	be shown. You can also assign a maximal number of observations you want to see, which is useful		be shown. You can also assign a maximal number of observations you want to see, which is useful
	if you have e.g. a slow internet connection.		if you have e.g. a slow internet connection.
Line 25:		Line 25:
	After changing one of the options, you must click the button 'Sort observations' to make a change.		After changing one of the options, you must click the button 'Sort observations' to make a change.

	~~attachment~~:~~observationsdialog~~.png		[[File:Observations.png\|Screenshot of the GenDB Observations Dialog]]

GenDBWiki/WebDocumentation/DialogWindows/ObservationDialog - Revision history

Agoesman at 10:42, 22 November 2011

Agoesman: Created page with "= Observations Dialog = The Observations Dialog displays all computed tool results for a GenDB region in a table. In the first column a graphical representation of the part of t..."