GenDBWiki/WebDocumentation/DialogWindows/SearchDialog - Revision history

Admin: 16 revisions

2011-10-26T06:15:08Z

16 revisions

← Older revision	Revision as of 08:15, 26 October 2011
(No difference)

imported>RobertSchmieder at 12:48, 4 April 2006

2006-04-04T12:48:16Z

← Older revision	Revision as of 14:48, 4 April 2006
(No difference)

imported>RobertSchmieder at 12:47, 4 April 2006

2006-04-04T12:47:20Z

@@ Line 27: / Line 27: @@
 [[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_c2.png]]
 The normal mode shows only a few information of the search hits. By clicking on the button '''"Show details"''', more information will be shown for this hit.
@@ Line 55: / Line 49: @@
 [[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_f.png]]

imported>RobertSchmieder at 12:46, 4 April 2006

2006-04-04T12:46:37Z

← Older revision		Revision as of 14:46, 4 April 2006
Line 27:		Line 27:

	[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_c2.png]]		[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_c2.png]]

			You can choose the values, which should be exported, by clicking in the associated checkboxes.
			Beneath this, there is a checkbox for adding a ''comment line'' to the export-file, which contains the name of the checked values.
			You also can choose the type of separation between '''"tabulator"''' (recommended) and '''"comma"'''.

			By clicking the '''"Export values"''' button, the export-file will be generated and a save dialog will be opened.

	The normal mode shows only a few information of the search hits. By clicking on the button '''"Show details"''', more information will be shown for this hit.		The normal mode shows only a few information of the search hits. By clicking on the button '''"Show details"''', more information will be shown for this hit.

imported>RobertSchmieder at 12:44, 4 April 2006

2006-04-04T12:44:52Z

imported>RobertSchmieder at 12:41, 4 April 2006

2006-04-04T12:41:29Z

imported>RobertSchmieder at 12:33, 4 April 2006

2006-04-04T12:33:45Z

@@ Line 3: / Line 3: @@
 This dialog lets you search for any regions that are in your project.
 The default mode hides you most information and is meant to be easy to work with. You can only search for CDS regions and use only attributes
 which are defined for CDS regions.
 [[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_a2.png]]
 The more advanced view opens when you click on the button '''more options'''.
@@ Line 12: / Line 19: @@
 [[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_b2.png]]
 [[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_c2.png]]
 [[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_d.png]]
 [[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_e.png]]
 [[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_f.png]]

imported>RobertSchmieder at 11:52, 4 April 2006

2006-04-04T11:52:56Z

← Older revision		Revision as of 13:52, 4 April 2006
Line 4:		Line 4:
	This dialog lets you search for any regions that are in your project.		This dialog lets you search for any regions that are in your project.
	The default mode hides you most information and is meant to be easy to work with. You can only search for CDS regions and use only attributes		The default mode hides you most information and is meant to be easy to work with. You can only search for CDS regions and use only attributes
	which are defined for CDS regions. The more advanced view opens when you click on the button '''more options'''.		which are defined for CDS regions.

			[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_a2.png]]

			The more advanced view opens when you click on the button '''more options'''.
	Now you can select the type of region you are looking for. Attributes that are not defined for the region you chose are shown in grey and cannot be searched. The other attributes can be searched in an arbitrary combination.		Now you can select the type of region you are looking for. Attributes that are not defined for the region you chose are shown in grey and cannot be searched. The other attributes can be searched in an arbitrary combination.

	[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$~~search~~.png]]		[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_b2.png]]

			[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_c2.png]]

			[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_d.png]]

			[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_e.png]]

			[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_f.png]]

	In this example, we searched for all Transcript regions which names start with "fig" followed by nor or some arbitrary character(s) "." followed by "235" and again followed by some arbitrary characters ".". We also set the region start to be below 20000.		In this example, we searched for all Transcript regions which names start with "fig" followed by nor or some arbitrary character(s) "." followed by "235" and again followed by some arbitrary characters ".". We also set the region start to be below 20000.

imported>DanielaBartels at 14:55, 3 December 2004

2004-12-03T14:55:06Z

← Older revision		Revision as of 16:55, 3 December 2004
Line 11:		Line 11:
	In this example, we searched for all Transcript regions which names start with "fig" followed by nor or some arbitrary character(s) "." followed by "235" and again followed by some arbitrary characters ".". We also set the region start to be below 20000.		In this example, we searched for all Transcript regions which names start with "fig" followed by nor or some arbitrary character(s) "." followed by "235" and again followed by some arbitrary characters ".". We also set the region start to be below 20000.
	Below the search options our results are shown. There are 2 regions which meet our criteria. These regions can either be annotated or marked in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]].		Below the search options our results are shown. There are 2 regions which meet our criteria. These regions can either be annotated or marked in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]].
	If '''annotate selection''' is pressed, the [[GenDBWiki/WebDocumentation/~~MainViews~~/MultiAnnotator\|MultiAnnotator]] will pop up to annotate all the regions at once. If the '''highlight selection''' button is pressed all checked regions will be highlighted blue in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] and its QuickNavigationBar.		If '''annotate selection''' is pressed, the [[GenDBWiki/WebDocumentation/DialogWindows/MultiAnnotator\|MultiAnnotator]] will pop up to annotate all the regions at once. If the '''highlight selection''' button is pressed all checked regions will be highlighted blue in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] and its QuickNavigationBar.
	If you click on the name of a region the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] will jump to that region and select it.		If you click on the name of a region the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] will jump to that region and select it.

imported>DanielaBartels at 14:49, 3 December 2004

2004-12-03T14:49:26Z

← Older revision		Revision as of 16:49, 3 December 2004
Line 11:		Line 11:
	In this example, we searched for all Transcript regions which names start with "fig" followed by nor or some arbitrary character(s) "." followed by "235" and again followed by some arbitrary characters ".". We also set the region start to be below 20000.		In this example, we searched for all Transcript regions which names start with "fig" followed by nor or some arbitrary character(s) "." followed by "235" and again followed by some arbitrary characters ".". We also set the region start to be below 20000.
	Below the search options our results are shown. There are 2 regions which meet our criteria. These regions can either be annotated or marked in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]].		Below the search options our results are shown. There are 2 regions which meet our criteria. These regions can either be annotated or marked in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]].
	If '''annotate selection''' is pressed, the [[MultiAnnotator]] will pop up to annotate all the regions at once. If the '''highlight selection''' button is pressed all checked regions will be highlighted blue in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] and its QuickNavigationBar.		If '''annotate selection''' is pressed, the [[GenDBWiki/WebDocumentation/MainViews/MultiAnnotator\|MultiAnnotator]] will pop up to annotate all the regions at once. If the '''highlight selection''' button is pressed all checked regions will be highlighted blue in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] and its QuickNavigationBar.
	If you click on the name of a region the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] will jump to that region and select it.		If you click on the name of a region the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] will jump to that region and select it.

← Older revision		Revision as of 16:55, 3 December 2004
Line 11:		Line 11:
	In this example, we searched for all Transcript regions which names start with "fig" followed by nor or some arbitrary character(s) "." followed by "235" and again followed by some arbitrary characters ".". We also set the region start to be below 20000.		In this example, we searched for all Transcript regions which names start with "fig" followed by nor or some arbitrary character(s) "." followed by "235" and again followed by some arbitrary characters ".". We also set the region start to be below 20000.
	Below the search options our results are shown. There are 2 regions which meet our criteria. These regions can either be annotated or marked in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]].		Below the search options our results are shown. There are 2 regions which meet our criteria. These regions can either be annotated or marked in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]].
	If '''annotate selection''' is pressed, the [[GenDBWiki/WebDocumentation/~~MainViews~~/MultiAnnotator\|MultiAnnotator]] will pop up to annotate all the regions at once. If the '''highlight selection''' button is pressed all checked regions will be highlighted blue in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] and its QuickNavigationBar.		If '''annotate selection''' is pressed, the [[GenDBWiki/WebDocumentation/DialogWindows/MultiAnnotator\|MultiAnnotator]] will pop up to annotate all the regions at once. If the '''highlight selection''' button is pressed all checked regions will be highlighted blue in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] and its QuickNavigationBar.
	If you click on the name of a region the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] will jump to that region and select it.		If you click on the name of a region the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] will jump to that region and select it.

← Older revision		Revision as of 16:49, 3 December 2004
Line 11:		Line 11:
	In this example, we searched for all Transcript regions which names start with "fig" followed by nor or some arbitrary character(s) "." followed by "235" and again followed by some arbitrary characters ".". We also set the region start to be below 20000.		In this example, we searched for all Transcript regions which names start with "fig" followed by nor or some arbitrary character(s) "." followed by "235" and again followed by some arbitrary characters ".". We also set the region start to be below 20000.
	Below the search options our results are shown. There are 2 regions which meet our criteria. These regions can either be annotated or marked in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]].		Below the search options our results are shown. There are 2 regions which meet our criteria. These regions can either be annotated or marked in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]].
	If '''annotate selection''' is pressed, the [[MultiAnnotator]] will pop up to annotate all the regions at once. If the '''highlight selection''' button is pressed all checked regions will be highlighted blue in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] and its QuickNavigationBar.		If '''annotate selection''' is pressed, the [[GenDBWiki/WebDocumentation/MainViews/MultiAnnotator\|MultiAnnotator]] will pop up to annotate all the regions at once. If the '''highlight selection''' button is pressed all checked regions will be highlighted blue in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] and its QuickNavigationBar.
	If you click on the name of a region the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] will jump to that region and select it.		If you click on the name of a region the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] will jump to that region and select it.

← Older revision		Revision as of 14:44, 4 April 2006
Line 8:		Line 8:
	The default mode hides you most information and is meant to be easy to work with. You can only search for CDS regions and use only attributes		The default mode hides you most information and is meant to be easy to work with. You can only search for CDS regions and use only attributes
	which are defined for CDS regions.		which are defined for CDS regions.
	If you want to search for ''"Annotaion Description"'' or/and ''"Annotation Comment"'' only in the last annotations, you have to choose the '''only lastest Annotation''' option for this search fields (available since GenDB version 2.4).		If you want to search for '''"Annotaion Description"''' or/and '''"Annotation Comment"''' only in the last annotations, you have to choose the '''"only lastest Annotation"''' option for this search fields (available since GenDB version 2.4).
	One of the new search fields (that are available since GenDB version 2.4) is the '''Contig(s)''' field. By default, the search will be done in all contigs, but you can specify your search for only a part of them by selecting one or more of the contigs of the contigs list.		One of the new search fields (that are available since GenDB version 2.4) is the '''"Contig(s)"''' field. By default, the search will be done in all contigs, but you can specify your search for only a part of them by selecting one or more of the contigs of the contigs list.

	[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_a2.png]]		[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_a2.png]]
Line 15:		Line 15:
	== Advanced search mode ==		== Advanced search mode ==

	The more advanced view opens when you click on the button '''More options >>'''.		The more advanced view opens when you click on the button '''"More options >>"'''.
	Now you can select the type of region you are looking for. Attributes that are not defined for the region you chose are shown in grey and cannot be searched. The other attributes can be searched in an arbitrary combination.		Now you can select the type of region you are looking for. Attributes that are not defined for the region you chose are shown in grey and cannot be searched. The other attributes can be searched in an arbitrary combination.

Line 28:		Line 28:
	[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_c2.png]]		[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_c2.png]]

	The normal mode shows only a few information of the search hits. By clicking on the button '''Show details''', more information will be shown for this hit.		The normal mode shows only a few information of the search hits. By clicking on the button '''"Show details"''', more information will be shown for this hit.

	[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_d.png]]		[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_d.png]]
Line 36:		Line 36:
	== What can be done with the results ==		== What can be done with the results ==

	At the end of the result list, you could find 2 buttons ('''Annotate selection''' and '''Highlight selection''') for normal users and 2 more buttons ('''Show sync annotation fields''' and '''Show exporting fields''') if you are allowed to export and change the annotations.		At the end of the result list, you could find 2 buttons ('''"Annotate selection"''' and '''"Highlight selection"''') for normal users and 2 more buttons ('''"Show sync annotation fields"''' and '''"Show exporting fields"''') if you are allowed to export and change the annotations.

	If '''"Annotate selection"''' is pressed, the [[GenDBWiki/WebDocumentation/DialogWindows/MultiAnnotator\|MultiAnnotator]] will pop up to annotate all the regions at once. If the '''"Highlight selection"''' button is pressed all checked regions will be highlighted blue in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] and its QuickNavigationBar.		If '''"Annotate selection"''' is pressed, the [[GenDBWiki/WebDocumentation/DialogWindows/MultiAnnotator\|MultiAnnotator]] will pop up to annotate all the regions at once. If the '''"Highlight selection"''' button is pressed all checked regions will be highlighted blue in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] and its QuickNavigationBar.

← Older revision		Revision as of 14:41, 4 April 2006
Line 8:		Line 8:
	The default mode hides you most information and is meant to be easy to work with. You can only search for CDS regions and use only attributes		The default mode hides you most information and is meant to be easy to work with. You can only search for CDS regions and use only attributes
	which are defined for CDS regions.		which are defined for CDS regions.
	If you want to search for 'Annotaion Description' or/and 'Annotation Comment' only in the last annotations, you have to choose the 'only lastest Annotation' option for this search fields (available since GenDB version 2.4).		If you want to search for ''"Annotaion Description"'' or/and ''"Annotation Comment"'' only in the last annotations, you have to choose the '''only lastest Annotation''' option for this search fields (available since GenDB version 2.4).
	One of the new search fields (that are available since GenDB version 2.4) is the 'Contig(s)' field. By default, the search will be done in all contigs, but you can specify your search for only a part of them by selecting one or more of the contigs of the contigs list.		One of the new search fields (that are available since GenDB version 2.4) is the '''Contig(s)''' field. By default, the search will be done in all contigs, but you can specify your search for only a part of them by selecting one or more of the contigs of the contigs list.

	[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_a2.png]]		[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_a2.png]]
Line 15:		Line 15:
	== Advanced search mode ==		== Advanced search mode ==

	The more advanced view opens when you click on the button '''~~more~~ options'''.		The more advanced view opens when you click on the button '''More options >>'''.
	Now you can select the type of region you are looking for. Attributes that are not defined for the region you chose are shown in grey and cannot be searched. The other attributes can be searched in an arbitrary combination.		Now you can select the type of region you are looking for. Attributes that are not defined for the region you chose are shown in grey and cannot be searched. The other attributes can be searched in an arbitrary combination.

Line 22:		Line 22:
	== Search results ==		== Search results ==

	In ~~the next~~ example, we searched for all CDS with the 'gene name' "par" followed by nor or some arbitrary character(s) ".*".		In this example, we searched for all CDS with the ''gene name'' "par" followed by nor or some arbitrary character(s) ".*".

	Below the search options our results are shown. There are 4 regions which meet our criteria. These regions can either be annotated or marked in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]].		Below the search options our results are shown. There are 4 regions which meet our criteria. These regions can either be annotated or marked in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]].
Line 28:		Line 28:
	[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_c2.png]]		[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_c2.png]]

	The ~~default~~ mode shows only a few information of the search hits. By clicking on the button '''Show details''', more information will be shown for this hit.		The normal mode shows only a few information of the search hits. By clicking on the button '''Show details''', more information will be shown for this hit.

			[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_d.png]]

	If you click on the name of a region the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] will jump to that region and select it.		If you click on the name of a region the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] will jump to that region and select it.

	~~[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_d.png]]~~

	== What can be done with the results ==		== What can be done with the results ==

	At the end of the result list, you could find 2 buttons ('Annotate selection' and 'Highlight selection') for normal users and 2 more buttons ('Show sync annotation fields' and 'Show exporting fields') if you are allowed to export and change the annotations.		At the end of the result list, you could find 2 buttons ('''Annotate selection''' and '''Highlight selection''') for normal users and 2 more buttons ('''Show sync annotation fields''' and '''Show exporting fields''') if you are allowed to export and change the annotations.

	If '''Annotate selection''' is pressed, the [[GenDBWiki/WebDocumentation/DialogWindows/MultiAnnotator\|MultiAnnotator]] will pop up to annotate all the regions at once. If the '''Highlight selection''' button is pressed all checked regions will be highlighted blue in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] and its QuickNavigationBar.		If '''"Annotate selection"''' is pressed, the [[GenDBWiki/WebDocumentation/DialogWindows/MultiAnnotator\|MultiAnnotator]] will pop up to annotate all the regions at once. If the '''"Highlight selection"''' button is pressed all checked regions will be highlighted blue in the [[GenDBWiki/WebDocumentation/MainViews/ContigView\|ContigView]] and its QuickNavigationBar.

	The 'annotation synchronization' and the 'result list exporter' are available since GenDB version 2.4.		The ''annotation synchronization'' and the ''result list exporter'' are available since GenDB version 2.4.

	The fields for the 'annotation synchronization' are shown by clicking on the button '''Show sync annotation fields'''. You can hide the fields by clicking on the same ~~butotn again~~.		The fields for the ''annotation synchronization'' are shown by clicking on the button '''"Show sync annotation fields"'''. You can hide the fields by clicking again on the same button.

	[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_e.png]]		[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_e.png]]

	The 'result list exporter' fields will be shown after clicking the button '''Show exporting fields'''.		The ''result list exporter'' fields will be shown after clicking the button '''"Show exporting fields"'''.

	[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_f.png]]		[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SearchDialog$search_f.png]]