https://wiki.cebitec.uni-bielefeld.de/brf-software/index.php?action=history&feed=atom&title=GenDBWiki%2FWebDocumentation%2FDialogWindows%2FSequenceViewerGenDBWiki/WebDocumentation/DialogWindows/SequenceViewer - Revision history2026-04-19T11:47:18ZRevision history for this page on the wikiMediaWiki 1.39.7https://wiki.cebitec.uni-bielefeld.de/brf-software/index.php?title=GenDBWiki/WebDocumentation/DialogWindows/SequenceViewer&diff=3615&oldid=prevAgoesman at 10:19, 30 November 20112011-11-30T10:19:35Z<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 12:19, 30 November 2011</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Move the mouse to the left border of a CDS, ''Left-Click'' and pull the mouse slightly under</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Move the mouse to the left border of a CDS, ''Left-Click'' and pull the mouse slightly under</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[<del style="font-weight: bold; text-decoration: none;">Image</del>:<del style="font-weight: bold; text-decoration: none;">GenDBWiki$$WebDocumentation$$DialogWindows$$SequenceViewer$</del>SequenceViewer.png]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[<ins style="font-weight: bold; text-decoration: none;">File</ins>:SequenceViewer.png<ins style="font-weight: bold; text-decoration: none;">|Screenshot of the GenDB Sequence Viewer.</ins>]]</div></td></tr>
</table>Agoesmanhttps://wiki.cebitec.uni-bielefeld.de/brf-software/index.php?title=GenDBWiki/WebDocumentation/DialogWindows/SequenceViewer&diff=3128&oldid=prevAdmin: 21 revisions2011-10-26T06:19:10Z<p>21 revisions</p>
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<td colspan="1" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 08:19, 26 October 2011</td>
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</td></tr></table>Adminhttps://wiki.cebitec.uni-bielefeld.de/brf-software/index.php?title=GenDBWiki/WebDocumentation/DialogWindows/SequenceViewer&diff=3127&oldid=previmported>Keywan at 11:59, 12 April 20062006-04-12T11:59:02Z<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 13:59, 12 April 2006</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>You can easily '''''select''''' some sequence, afterwards copy it with '''''Control+C''''', and finally paste it with '''''Control+V''''' into an arbitrary place.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>You can easily '''''select''''' some sequence, afterwards copy it with '''''Control+C''''', and finally paste it with '''''Control+V''''' into an arbitrary place.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Pressing the Show Sequence button in the main window of GenDB, will display the [[SequenceViewer]]. Green rectangles represent the CDS. The CDS that is activated in GenDB has a stronger border and a brighter green color (directly reachable with the '''''Center''''' button). Moving the mouse over a CDS, displays its details into the '''''Region-Information''''' table. The <del style="font-weight: bold; text-decoration: none;">Viewer </del>allows you to scroll within a 6000nt-window. In order to get the next or previous 6000nt of the contig press the '''''Left''''' or '''''Right''''' button. Thus, its possible to walk easily through the whole contig.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Pressing the Show Sequence button in the main window of GenDB, will display the [[SequenceViewer]]. Green rectangles represent the CDS. The CDS that is activated in GenDB has a stronger border and a brighter green color (directly reachable with the '''''Center''''' button)<ins style="font-weight: bold; text-decoration: none;">. CDS that are marked as ignored are dashed and grey</ins>. Moving the mouse over a CDS, displays its details into the '''''Region-Information''''' table. The <ins style="font-weight: bold; text-decoration: none;">[[SequenceViewer]] </ins>allows you to scroll within a 6000nt-window. In order to get the next or previous 6000nt of the contig press the '''''Left''''' or '''''Right''''' button. Thus, its possible to walk easily through the whole contig.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Selecting any sequence will display the selected sequence at the '''''Sequence-Editor'''''. If you select some sequence on the back strands, a '''''Reverse''''' button allows you to reverse the selected sequence, in order to obtain the sequence in the biological right direction. Afterwards you can select this sequence, copy and paste it into e.g. a file.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Selecting any sequence will display the selected sequence at the '''''Sequence-Editor'''''. If you select some sequence on the back strands, a '''''Reverse''''' button allows you to reverse the selected sequence, in order to obtain the sequence in the biological right direction. Afterwards you can select this sequence, copy and paste it into e.g. a file.</div></td></tr>
</table>imported>Keywanhttps://wiki.cebitec.uni-bielefeld.de/brf-software/index.php?title=GenDBWiki/WebDocumentation/DialogWindows/SequenceViewer&diff=3126&oldid=previmported>Keywan at 11:45, 12 April 20062006-04-12T11:45:33Z<p></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Move the mouse to the left border of a CDS, ''Left-Click'' and pull the mouse slightly under</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Move the mouse to the left border of a CDS, ''Left-Click'' and pull the mouse slightly under</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SequenceViewer$<del style="font-weight: bold; text-decoration: none;">seqviewer</del>.png]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SequenceViewer$<ins style="font-weight: bold; text-decoration: none;">SequenceViewer</ins>.png]]</div></td></tr>
</table>imported>Keywanhttps://wiki.cebitec.uni-bielefeld.de/brf-software/index.php?title=GenDBWiki/WebDocumentation/DialogWindows/SequenceViewer&diff=3125&oldid=previmported>Keywan at 16:14, 6 April 20062006-04-06T16:14:40Z<p></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Move the mouse to the left border of a CDS, ''Left-Click'' and pull the mouse slightly under</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Move the mouse to the left border of a CDS, ''Left-Click'' and pull the mouse slightly under</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SequenceViewer$seqviewer.<del style="font-weight: bold; text-decoration: none;">jpg</del>]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$SequenceViewer$seqviewer.<ins style="font-weight: bold; text-decoration: none;">png</ins>]]</div></td></tr>
</table>imported>Keywanhttps://wiki.cebitec.uni-bielefeld.de/brf-software/index.php?title=GenDBWiki/WebDocumentation/DialogWindows/SequenceViewer&diff=3124&oldid=previmported>Keywan at 16:12, 6 April 20062006-04-06T16:12:58Z<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:12, 6 April 2006</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Move the mouse to the left border of a CDS, ''Left-Click'' and pull the mouse slightly under</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Move the mouse to the left border of a CDS, ''Left-Click'' and pull the mouse slightly under</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[<del style="font-weight: bold; text-decoration: none;">Media</del>:GenDBWiki$$WebDocumentation$$DialogWindows$$SequenceViewer$seqviewer]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[<ins style="font-weight: bold; text-decoration: none;">Image</ins>:GenDBWiki$$WebDocumentation$$DialogWindows$$SequenceViewer$seqviewer<ins style="font-weight: bold; text-decoration: none;">.jpg</ins>]]</div></td></tr>
</table>imported>Keywanhttps://wiki.cebitec.uni-bielefeld.de/brf-software/index.php?title=GenDBWiki/WebDocumentation/DialogWindows/SequenceViewer&diff=3123&oldid=previmported>Keywan at 16:10, 6 April 20062006-04-06T16:10:19Z<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:10, 6 April 2006</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>In order to obtain quickly the whole sequence of a CDS:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>In order to obtain quickly the whole sequence of a CDS:</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Move the mouse to the left border of a CDS, ''Left-Click'' and pull the mouse slightly under</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Move the mouse to the left border of a CDS, ''Left-Click'' and pull the mouse slightly under</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
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</table>imported>Keywanhttps://wiki.cebitec.uni-bielefeld.de/brf-software/index.php?title=GenDBWiki/WebDocumentation/DialogWindows/SequenceViewer&diff=3122&oldid=previmported>Keywan at 23:59, 24 March 20062006-03-24T23:59:45Z<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 01:59, 25 March 2006</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>You can easily '''''select''''' some sequence, afterwards copy it with '''''Control+C''''', and finally paste it with '''''Control+V''''' into an arbitrary place.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>You can easily '''''select''''' some sequence, afterwards copy it with '''''Control+C''''', and finally paste it with '''''Control+V''''' into an arbitrary place.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Pressing the Show Sequence button in the main window of GenDB, will display the [[SequenceViewer]]. Green rectangles represent the CDS. The CDS that is activated in GenDB has a stronger border and a brighter green color (directly reachable with the '''''Center''''' button). Moving the mouse over a CDS, displays its details into the Region-Information table. The Viewer allows you to scroll within a 6000nt-window. In order to get the next or previous 6000nt of the contig press the '''''Left''''' or '''''Right''''' button. Thus, its possible to walk easily through the whole contig.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Pressing the Show Sequence button in the main window of GenDB, will display the [[SequenceViewer]]. Green rectangles represent the CDS. The CDS that is activated in GenDB has a stronger border and a brighter green color (directly reachable with the '''''Center''''' button). Moving the mouse over a CDS, displays its details into the <ins style="font-weight: bold; text-decoration: none;">'''''</ins>Region-Information<ins style="font-weight: bold; text-decoration: none;">''''' </ins>table. The Viewer allows you to scroll within a 6000nt-window. In order to get the next or previous 6000nt of the contig press the '''''Left''''' or '''''Right''''' button. Thus, its possible to walk easily through the whole contig.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Selecting any sequence will display the selected sequence at the '''''Sequence-Editor'''''. If you select some sequence on the back strands, a '''''Reverse''''' button allows you to reverse the selected sequence, in order to obtain the sequence in the biological right direction. Afterwards you can select this sequence, copy and paste it into e.g. a file.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Selecting any sequence will display the selected sequence at the '''''Sequence-Editor'''''. If you select some sequence on the back strands, a '''''Reverse''''' button allows you to reverse the selected sequence, in order to obtain the sequence in the biological right direction. Afterwards you can select this sequence, copy and paste it into e.g. a file.</div></td></tr>
</table>imported>Keywanhttps://wiki.cebitec.uni-bielefeld.de/brf-software/index.php?title=GenDBWiki/WebDocumentation/DialogWindows/SequenceViewer&diff=3121&oldid=previmported>Keywan at 23:58, 24 March 20062006-03-24T23:58:52Z<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 01:58, 25 March 2006</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l7">Line 7:</td>
<td colspan="2" class="diff-lineno">Line 7:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Pressing the Show Sequence button in the main window of GenDB, will display the [[SequenceViewer]]. Green rectangles represent the CDS. The CDS that is activated in GenDB has a stronger border and a brighter green color (directly reachable with the '''''Center''''' button). Moving the mouse over a CDS, displays its details into the Region-Information table. The Viewer allows you to scroll within a 6000nt-window. In order to get the next or previous 6000nt of the contig press the '''''Left''''' or '''''Right''''' button. Thus, its possible to walk easily through the whole contig.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Pressing the Show Sequence button in the main window of GenDB, will display the [[SequenceViewer]]. Green rectangles represent the CDS. The CDS that is activated in GenDB has a stronger border and a brighter green color (directly reachable with the '''''Center''''' button). Moving the mouse over a CDS, displays its details into the Region-Information table. The Viewer allows you to scroll within a 6000nt-window. In order to get the next or previous 6000nt of the contig press the '''''Left''''' or '''''Right''''' button. Thus, its possible to walk easily through the whole contig.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Selecting any sequence will display the selected sequence at the '''''Sequence-Editor'''''. If you select some sequence on the back strands, a '''''Reverse''''' button allows you to reverse the selected sequence, in order to obtain the sequence in the right direction. Afterwards you can select this sequence, copy and paste it into e.g. a file.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Selecting any sequence will display the selected sequence at the '''''Sequence-Editor'''''. If you select some sequence on the back strands, a '''''Reverse''''' button allows you to reverse the selected sequence, in order to obtain the sequence in the <ins style="font-weight: bold; text-decoration: none;">biological </ins>right direction. Afterwards you can select this sequence, copy and paste it into e.g. a file.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== How to select a sequence ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== How to select a sequence ===</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The behaviour of the [[SequenceViewer]] is similar to common text-editors (e.g. notepad). You have two possibilities to select an arbitrary sequence:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The behaviour of the [[SequenceViewer]] is similar to common text-editors (e.g. notepad). You have two possibilities to select an arbitrary sequence:</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Press the left mouse button and move it to the right or to the left (recommeneded for short sequences)</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Press the left mouse button and move it to the right or to the left (recommeneded for short sequences)</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* ''Left-Click'' on start <del style="font-weight: bold; text-decoration: none;">position</del>, move the scroll bar, ''Shift+Left-Click'' on end <del style="font-weight: bold; text-decoration: none;">position </del>(recommeneded for long sequences)</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* ''Left-Click'' on <ins style="font-weight: bold; text-decoration: none;">the </ins>start <ins style="font-weight: bold; text-decoration: none;">character</ins>, move the scroll bar, ''Shift+Left-Click'' on <ins style="font-weight: bold; text-decoration: none;">the </ins>end <ins style="font-weight: bold; text-decoration: none;">character </ins>(recommeneded for long sequences)</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>In order to obtain quickly the whole sequence of a CDS:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>In order to obtain quickly the whole sequence of a CDS:</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* Move the mouse to the left border of a CDS, ''Left-Click'' and pull <del style="font-weight: bold; text-decoration: none;">it </del>slightly under</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* Move the mouse to the left border of a CDS, ''Left-Click'' and pull <ins style="font-weight: bold; text-decoration: none;">the mouse </ins>slightly under</div></td></tr>
</table>imported>Keywanhttps://wiki.cebitec.uni-bielefeld.de/brf-software/index.php?title=GenDBWiki/WebDocumentation/DialogWindows/SequenceViewer&diff=3120&oldid=previmported>Keywan at 23:54, 24 March 20062006-03-24T23:54:50Z<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 01:54, 25 March 2006</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l5">Line 5:</td>
<td colspan="2" class="diff-lineno">Line 5:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>You can easily '''''select''''' some sequence, afterwards copy it with '''''Control+C''''', and finally paste it with '''''Control+V''''' into an arbitrary place.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>You can easily '''''select''''' some sequence, afterwards copy it with '''''Control+C''''', and finally paste it with '''''Control+V''''' into an arbitrary place.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Pressing the Show Sequence button in the main window of GenDB, will display the [[SequenceViewer]]. Green rectangles represent the CDS. The CDS that is activated in GenDB has a stronger border and a brighter green color (directly reachable with the '''''Center''''' button). Moving the mouse over a CDS, displays its details into the Region-Information table. The Viewer allows you to scroll within a 6000nt-window. In order to get the next or previous 6000nt of the contig press the <del style="font-weight: bold; text-decoration: none;">left/right </del>button. Thus, its possible to walk easily through the whole contig.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Pressing the Show Sequence button in the main window of GenDB, will display the [[SequenceViewer]]. Green rectangles represent the CDS. The CDS that is activated in GenDB has a stronger border and a brighter green color (directly reachable with the '''''Center''''' button). Moving the mouse over a CDS, displays its details into the Region-Information table. The Viewer allows you to scroll within a 6000nt-window. In order to get the next or previous 6000nt of the contig press the <ins style="font-weight: bold; text-decoration: none;">'''''Left''''' or '''''Right''''' </ins>button. Thus, its possible to walk easily through the whole contig.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Selecting any sequence will display the selected sequence at the '''''Sequence-Editor'''''. If you select some sequence on the back strands, a '''''Reverse''''' button allows <del style="font-weight: bold; text-decoration: none;">yout </del>to reverse the selected sequence, in order to obtain the sequence in the right direction.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Selecting any sequence will display the selected sequence at the '''''Sequence-Editor'''''. If you select some sequence on the back strands, a '''''Reverse''''' button allows <ins style="font-weight: bold; text-decoration: none;">you </ins>to reverse the selected sequence, in order to obtain the sequence in the right direction<ins style="font-weight: bold; text-decoration: none;">. Afterwards you can select this sequence, copy and paste it into e.g. a file</ins>.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== How to select a sequence ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== How to select a sequence ===</div></td></tr>
</table>imported>Keywan