GenDBWiki/WebDocumentation/FAQs - Revision history

Agoesman at 15:23, 28 October 2011

2011-10-28T15:23:14Z

← Older revision		Revision as of 17:23, 28 October 2011
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	= FAQs for the GenDB Web Interface =		= FAQs for the GenDB Web Interface =

	~~1.) [[#Q1\|What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog?]]~~

	~~2.) [[#Q2\|How can I view an alignment?]]~~

	~~3.) [[#Q3\|How do I search for a gene name like dnaA?]]~~

	~~4.) [[#Q4\|?]]~~

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Agoesman at 15:22, 28 October 2011

2011-10-28T15:22:38Z

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	~~__NOTOC__~~
	= FAQs for the GenDB Web Interface =		= FAQs for the GenDB Web Interface =

Tk at 14:03, 28 October 2011

2011-10-28T14:03:42Z

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	Open the search dialog, and enter the gene name into the field Genename (NOT Name, since this is the name of a region assigned automatically by GenDB). Select 'exact' if you know a gene name exactly like 'dnaA'. If you want to search for names with specific patterns select 'regexp'. Then you can use regular expressions, e.g. like		Open the search dialog, and enter the gene name into the field Genename (NOT Name, since this is the name of a region assigned automatically by GenDB). Select 'exact' if you know a gene name exactly like 'dnaA'. If you want to search for names with specific patterns select 'regexp'. Then you can use regular expressions, e.g. like

	* `gyr.` searches for gyrA, gyr1, gyrB, ...		* <tt>gyr.</tt> searches for gyrA, gyr1, gyrB, ...
	* `gyr.*` searches for gyrA, gyr1, gyrB, gyrAA, gyrAA, gyrABC, gyr123ABCD, ...		* <tt>gyr.*</tt> searches for gyrA, gyr1, gyrB, gyrAA, gyrAA, gyrABC, gyr123ABCD, ...

	<span id="Q4"></span>		<span id="Q4"></span>
	== Q4: ? ==		== Q4: ? ==

Tk at 14:03, 28 October 2011

2011-10-28T14:03:01Z

← Older revision		Revision as of 16:03, 28 October 2011
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	= FAQs for the GenDB Web Interface =		= FAQs for the GenDB Web Interface =

	1.) [[#Q1\|What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog?]]		1.) [[#Q1\|What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog?]]

	2.) [[#Q2\|How can I view an alignment?]]		2.) [[#Q2\|How can I view an alignment?]]

	3.) [[#Q3\|How do I search for a gene name like dnaA?]]		3.) [[#Q3\|How do I search for a gene name like dnaA?]]

	4.) [[#Q4\|?]]		4.) [[#Q4\|?]]

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Admin: 8 revisions

2011-10-26T06:16:11Z

8 revisions

← Older revision	Revision as of 08:16, 26 October 2011
(No difference)

imported>AlexanderGoesmann at 12:39, 24 November 2004

2004-11-24T12:39:54Z

← Older revision		Revision as of 14:39, 24 November 2004
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	__NOTOC__		__NOTOC__
	= FAQs =		= FAQs for the GenDB Web Interface =

	1.) [[#Q1\|What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog?]]		1.) [[#Q1\|What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog?]]

	2.) [[#Q2\|How can I view an alignment?]]		2.) [[#Q2\|How can I view an alignment?]]

			3.) [[#Q3\|How do I search for a gene name like dnaA?]]

			4.) [[#Q4\|?]]

			----

	<span id="Q1"></span>		<span id="Q1"></span>
	== Q1: What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog? ==		== Q1: What is the difference between the `Add New` and the `Accept` button in the Annotation Dialog? ==

			Both buttons create a new annotation. Pressing the `Accept` button will automatically set the `status region` to `finished` and the `status function` to `annotated`. If you want to set a different status for a region you will have to use the `Add new` button.

	<span id="Q2"></span>		<span id="Q2"></span>
	== Q2: How can I view an alignment? ==		== Q2: How can I view an alignment? ==

			In the list of observations for a selected CDS you can find entries for a tools. Click on 'Result' in the rightmost column to view the alignment. If you don't see any observations of this tool in your list you have to adjust the tool settings in the configuration dialog.

			<span id="Q3"></span>
			== Q3: How do I search for a gene name like dnaA? ==

			Open the search dialog, and enter the gene name into the field Genename (NOT Name, since this is the name of a region assigned automatically by GenDB). Select 'exact' if you know a gene name exactly like 'dnaA'. If you want to search for names with specific patterns select 'regexp'. Then you can use regular expressions, e.g. like

			* `gyr.` searches for gyrA, gyr1, gyrB, ...
			* `gyr.*` searches for gyrA, gyr1, gyrB, gyrAA, gyrAA, gyrABC, gyr123ABCD, ...

			<span id="Q4"></span>
			== Q4: ? ==

imported>DanielaBartels at 12:19, 24 November 2004

2004-11-24T12:19:18Z

← Older revision		Revision as of 14:19, 24 November 2004
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	<span id="Q1"></span>		<span id="Q1"></span>
	== Q1: What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog? ==		== Q1: What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog? ==

	A:

	<span id="Q2"></span>		<span id="Q2"></span>
	== Q2: How can I view an alignment? ==		== Q2: How can I view an alignment? ==

	A:

imported>DanielaBartels at 12:17, 24 November 2004

2004-11-24T12:17:56Z

← Older revision		Revision as of 14:17, 24 November 2004
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	1.) [[#Q1\|What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog?]]		1.) [[#Q1\|What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog?]]
			2.) [[#Q2\|How can I view an alignment?]]

	<span id="Q1"></span>		<span id="Q1"></span>
	== Q1: What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog? ==		== Q1: What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog? ==

			A:

			<span id="Q2"></span>
			== Q2: How can I view an alignment? ==

			A:

imported>DanielaBartels at 12:16, 24 November 2004

2004-11-24T12:16:29Z

← Older revision		Revision as of 14:16, 24 November 2004
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	1.) [[#Q1\|What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog?]]		1.) [[#Q1\|What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog?]]

	~~Anchor(~~Q1)		<span id="Q1"></span>

	== Q1: What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog? ==		== Q1: What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog? ==

imported>DanielaBartels at 12:16, 24 November 2004

2004-11-24T12:16:16Z

← Older revision		Revision as of 14:16, 24 November 2004
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	Anchor(Q1)		Anchor(Q1)

	== Q1: What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog? ==		== Q1: What is the difference between the 'Add New' and the 'Accept' button in the Annotation Dialog? ==