Agoesman at 20:56, 10 November 2011

2011-11-10T20:56:43Z

← Older revision		Revision as of 22:56, 10 November 2011
Line 3:		Line 3:
	attachment:goparc_COG_view.png		attachment:goparc_COG_view.png

	\|\| 1 \|\| search COG number \|\| Typing in a valid COG classification number (without leading 'COG') will provide a list of search results (2) \|\|		{\| border="1" cellpadding="5"
	\|\| 2 \|\| search results \|\| Here the results of the search performed in (1) are displayed. Click on en entry to select. \|\|		\|1\|\|search COG number\|\|Typing in a valid COG classification number (without leading 'COG') will provide a list of search results (2)
	\|\| 3 \|\| COG tree \|\| Alternatively you can browse through the COG tree provided here. Clicking on an item either selects this item or further expands the tree. \|\|		\|-
	\|\| 4 \|\| search in genome \|\| Once you have selected a COG nunmber in (2) or (3) it will be displayed here. You can then select to search the currently loaded genome for ''observations'', ''machine anntotations'' and ''human annotations'' that have this COG number assigned. Hitting the ''search'' button invokes the search which can take a while depending on the size of the genome. Please be patient. \|\|		\|2 \|\| search results \|\| Here the results of the search performed in (1) are displayed. Click on en entry to select.
	\|\| 5 \|\| search statictics \|\| Once the search in the genome (invoked in (4)) is finished, statistics of this search are given here. You are presented the number of hits belonging to ''observations'' (dark blue background), to ''machine annotations'' (green), and to ''human annotations'' (red) \|\|		\|-
	\|\| 6 \|\| search results \|\| The results of the search invoked in (4) are listed here. Each region is displayed in its own field. The background color again indicates the kind of annotation (as explained in (5). In the ''Action'' column a number of links is provided for ''annotating'' this region, viewing the ''report'' or the ''observations'' associated to this region. \|\|		\|3 \|\| COG tree \|\| Alternatively you can browse through the COG tree provided here. Clicking on an item either selects this item or further expands the tree.
	\|\| 7 \|\| further actions \|\| On the bottom of page a number of further actions can be invoked like ''highlighting'', ''annotating'' and ''exporting'' the marked regions. \|\|		\|-
			\|4 \|\| search in genome \|\| Once you have selected a COG nunmber in (2) or (3) it will be displayed here. You can then select to search the currently loaded genome for ''observations'', ''machine anntotations'' and ''human annotations'' that have this COG number assigned. Hitting the ''search'' button invokes the search which can take a while depending on the size of the genome. Please be patient.
			\|-
			\|5 \|\| search statictics \|\| Once the search in the genome (invoked in (4)) is finished, statistics of this search are given here. You are presented the number of hits belonging to ''observations'' (dark blue background), to ''machine annotations'' (green), and to ''human annotations'' (red)
			\|-
			\|6 \|\| search results \|\| The results of the search invoked in (4) are listed here. Each region is displayed in its own field. The background color again indicates the kind of annotation (as explained in (5). In the ''Action'' column a number of links is provided for ''annotating'' this region, viewing the ''report'' or the ''observations'' associated to this region.
			\|-
			\|7 \|\| further actions \|\| On the bottom of page a number of further actions can be invoked like ''highlighting'', ''annotating'' and ''exporting'' the marked regions.
			\|}

Agoesman: Created page with "= COG (Cluster of orthologous groups) Browser = attachment:goparc_COG_view.png || 1 || search COG number || Typing in a valid COG classification number (without leading 'COG') ..."

2011-11-10T20:47:27Z

Created page with "= COG (Cluster of orthologous groups) Browser = attachment:goparc_COG_view.png || 1 || search COG number || Typing in a valid COG classification number (without leading 'COG') ..."

New page

= COG (Cluster of orthologous groups) Browser =

attachment:goparc_COG_view.png

|| 1 || search COG number || Typing in a valid COG classification number (without leading 'COG') will provide a list of search results (2) ||
|| 2 || search results || Here the results of the search performed in (1) are displayed. Click on en entry to select. ||
|| 3 || COG tree || Alternatively you can browse through the COG tree provided here. Clicking on an item either selects this item or further expands the tree. ||
|| 4 || search in genome || Once you have selected a COG nunmber in (2) or (3) it will be displayed here. You can then select to search the currently loaded genome for ''observations'', ''machine anntotations'' and ''human annotations'' that have this COG number assigned. Hitting the ''search'' button invokes the search which can take a while depending on the size of the genome. Please be patient. ||
|| 5 || search statictics || Once the search in the genome (invoked in (4)) is finished, statistics of this search are given here. You are presented the number of hits belonging to ''observations'' (dark blue background), to ''machine annotations'' (green), and to ''human annotations'' (red) ||
|| 6 || search results || The results of the search invoked in (4) are listed here. Each region is displayed in its own field. The background color again indicates the kind of annotation (as explained in (5). In the ''Action'' column a number of links is provided for ''annotating'' this region, viewing the ''report'' or the ''observations'' associated to this region. ||
|| 7 || further actions || On the bottom of page a number of further actions can be invoked like ''highlighting'', ''annotating'' and ''exporting'' the marked regions. ||

GenDBWiki/WebDocumentation/MainViews/COGView - Revision history

Agoesman at 20:56, 10 November 2011

Agoesman: Created page with "= COG (Cluster of orthologous groups) Browser = attachment:goparc_COG_view.png || 1 || search COG number || Typing in a valid COG classification number (without leading 'COG') ..."