HowToInstallRSPerl - Revision history

Admin: 24 revisions

2011-10-26T06:16:07Z

24 revisions

← Older revision	Revision as of 08:16, 26 October 2011
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imported>MichaelDondrup at 13:33, 15 June 2010

2010-06-15T13:33:54Z

← Older revision		Revision as of 15:33, 15 June 2010
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	Use this version for general installation:		Use this version for general installation:
			[[Media:HowToInstallRSPerl$RSPerl_1.0-1.tar.gz]]
	The release RSPerl v.1.0 under a FreeBSD licence (see LICENCE). Fixes a bug in the intallation process on Ubuntu.		The release RSPerl v.1.0 under a FreeBSD licence (see LICENCE). Fixes a bug in the intallation process on Ubuntu.
	Patch 1.0-1 should now also install under R 2.11, tested on Ubuntu 10.04 (lucid) with R 2.10.1 and 2.11.1		Patch 1.0-1 should now also install under R 2.11, tested on Ubuntu 10.04 (lucid) with R 2.10.1 and 2.11.1
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	== Issues ==		== Issues ==

	* ~~All resolved :)) Thanx Duncan~~		* There are several compile warnings
			* The build system using Makefile.PL.in makes some invalid assumptions about paths
			* The build system will break if the R in your PATH is not the same R you want to install RSPerl to

	== System specific issues ==		== System specific issues ==

imported>MichaelDondrup at 13:27, 15 June 2010

2010-06-15T13:27:49Z

← Older revision		Revision as of 15:27, 15 June 2010
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	http://www.omegahat.org/RSPerl/index.html		http://www.omegahat.org/RSPerl/index.html

	Version 0.92 has been ~~locally~~ tested with		Version 1.0-1 has been tested with:

			* Ubuntu 10.04 x86_64 (lucid)
			* R 2.10.1 & 2.11.1
			* Perl 5.10.1

			Version 0.92 has been tested with

	* FreeBSD 5.4		* FreeBSD 5.4

imported>MichaelDondrup at 13:24, 15 June 2010

2010-06-15T13:24:52Z

← Older revision		Revision as of 15:24, 15 June 2010
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	* Perl >= 5.8.x		* Perl >= 5.8.x
	* R >= 2.~~7.2~~		* R >= 2.10.x

	~~both installed and working~~.

	R needs to be configured with <code><nowiki>--enable-R-shlib</nowiki></code> switch (which is the case by default).		R needs to be configured with <code><nowiki>--enable-R-shlib</nowiki></code> switch (which is the case by default).
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	See the Changes file: [[Media:HowToInstallRSPerl$Changes.html]].		See the Changes file: [[Media:HowToInstallRSPerl$Changes.html]].

	~~And the patch to view the code differences:~~
	~~[[Media:HowToInstallRSPerl$rsperl0.91to0.92.patch]]~~

	Use this version for general installation:		Use this version for general installation:

	The release RSPerl v.1.0 ~~with~~ a FreeBSD~~-like~~ licence. Fixes a bug in the intallation process on Ubuntu:		The release RSPerl v.1.0 under a FreeBSD licence (see LICENCE). Fixes a bug in the intallation process on Ubuntu.
	~~[[Media:HowToInstallRSPerl$RSPerl_1~~.0.~~tar~~.~~gz]]~~		Patch 1.0-1 should now also install under R 2.11, tested on Ubuntu 10.04 (lucid) with R 2.10.1 and 2.11.1

	------		------

	Older versions		Older versions

			[[Media:HowToInstallRSPerl$RSPerl_1.0.tar.gz]] (warnings turned to build errors between R 2.10 and R 2.11)

	0.92:[[Media:HowToInstallRSPerl$RSPerl_0.92.tar.gz]]		0.92:[[Media:HowToInstallRSPerl$RSPerl_0.92.tar.gz]]
			And the patch to view the code differences between the Omegahat version and 0.92:
			[[Media:HowToInstallRSPerl$rsperl0.91to0.92.patch]]

	This version includes a patch that hardcodes ld_runpath, therefore reducing the need to set the LD_LIBRARY_PATH.		This version includes a patch that hardcodes ld_runpath, therefore reducing the need to set the LD_LIBRARY_PATH.

imported>MichaelDondrup at 15:37, 11 June 2010

2010-06-11T15:37:35Z

← Older revision		Revision as of 17:37, 11 June 2010
Line 44:		Line 44:

	Use this version for general installation:		Use this version for general installation:
	[[Media:HowToInstallRSPerl$RSPerl_0.92.tar.gz]]
			The release RSPerl v.1.0 with a FreeBSD-like licence. Fixes a bug in the intallation process on Ubuntu:
			[[Media:HowToInstallRSPerl$RSPerl_1.0.tar.gz]]

			------

			Older versions

			0.92:[[Media:HowToInstallRSPerl$RSPerl_0.92.tar.gz]]

	This version includes a patch that hardcodes ld_runpath, therefore reducing the need to set the LD_LIBRARY_PATH.		This version includes a patch that hardcodes ld_runpath, therefore reducing the need to set the LD_LIBRARY_PATH.

imported>MichaelDondrup at 10:16, 10 April 2009

2009-04-10T10:16:38Z

@@ Line 101: / Line 101: @@
 To avoid having to set <code><nowiki>PERL5LIB</nowiki></code> you could also copy the content of $RSPERLDIR/share/lib/site_perl/ to the
 site_perl directory of your local perl installation.
 == Testing R from Perl ==

imported>MichaelDondrup at 12:43, 9 April 2009

2009-04-09T12:43:55Z

← Older revision		Revision as of 14:43, 9 April 2009
Line 133:		Line 133:

	There is a patch kindly provided by Björn Fischer from the [[CeBiTec]] support group, that will remove the need to set the LD_LIBRARY_PATH.		There is a patch kindly provided by Björn Fischer from the [[CeBiTec]] support group, that will remove the need to set the LD_LIBRARY_PATH.
	The patched package: ~~attachement~~:RSPerl_0.92_ldlibpathhack.tar.gz		The patched package: [[Media:HowToInstallRSPerl$RSPerl_0.92_ldlibpathhack.tar.gz]]

	=== FreeBSD ===		=== FreeBSD ===

imported>MichaelDondrup at 12:42, 9 April 2009

2009-04-09T12:42:38Z

← Older revision		Revision as of 14:42, 9 April 2009
Line 133:		Line 133:

	There is a patch kindly provided by Björn Fischer from the [[CeBiTec]] support group, that will remove the need to set the LD_LIBRARY_PATH.		There is a patch kindly provided by Björn Fischer from the [[CeBiTec]] support group, that will remove the need to set the LD_LIBRARY_PATH.
	The ~~patch~~: RSPerl_0.92_ldlibpathhack.tar.gz		The patched package: attachement:RSPerl_0.92_ldlibpathhack.tar.gz

	=== FreeBSD ===		=== FreeBSD ===

imported>MichaelDondrup at 12:35, 9 April 2009

2009-04-09T12:35:38Z

← Older revision		Revision as of 14:35, 9 April 2009
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	any more! Report any problems with the derived package to the emma-devel mailing list.		any more! Report any problems with the derived package to the emma-devel mailing list.

	You can also he original package ~~ca nbe~~ downloaded from:		See the Changes file: [[Media:HowToInstallRSPerl$Changes.html]].

			And the patch to view the code differences:
			[[Media:HowToInstallRSPerl$rsperl0.91to0.92.patch]]

			Use this version for general installation:
			[[Media:HowToInstallRSPerl$RSPerl_0.92.tar.gz]]

			This version includes a patch that hardcodes ld_runpath, therefore reducing the need to set the LD_LIBRARY_PATH.
			<span style="font-size: x-large; color: red">!</span> Use this module with the [[CeBiTec]] infrastructure: [[Media:HowToInstallRSPerl$RSPerl_0.92_ldlibpathhack.tar.gz]] <span style="font-size: x-large; color: red">!</span>

			You can also he original package can be downloaded from:
	http://www.omegahat.org/RSPerl/index.html		http://www.omegahat.org/RSPerl/index.html

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	<pre><nowiki>		<pre><nowiki>
	somebody# R CMD INSTALL -l <whereever> --configure-args='--with-in-perl --with-modules=""' RSPerl_X.tar.gz		somebody# R CMD INSTALL -l <whereever> -c --configure-args='--with-in-perl --with-modules=""' RSPerl_X.tar.gz
	</nowiki></pre>		</nowiki></pre>

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	<pre><nowiki>		<pre><nowiki>
	somebody# perl test.pl		somebody# perl test.pl
	~~RSPERL 0.8.0 - May 23 2006, 12:27:13 initialized~~
	[...no error message...]		[...no error message...]
	somebody# perl test1.pl; perl test2.pl; perl test3.pl; perl plot.pl		somebody# perl test1.pl; perl test2.pl; perl test3.pl; perl plot.pl
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	There is a patch kindly provided by Björn Fischer from the [[CeBiTec]] support group, that will remove the need to set the LD_LIBRARY_PATH.		There is a patch kindly provided by Björn Fischer from the [[CeBiTec]] support group, that will remove the need to set the LD_LIBRARY_PATH.
	The patch ~~will appear here soon~~.		The patch: RSPerl_0.92_ldlibpathhack.tar.gz

	=== FreeBSD ===		=== FreeBSD ===

imported>MichaelDondrup at 12:10, 9 April 2009

2009-04-09T12:10:51Z

← Older revision		Revision as of 14:10, 9 April 2009
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	RSPerl -- The Omegahat interface for R and Perl.		RSPerl -- The Omegahat interface for R and Perl.

	Follow these instructions to install the RSPerl ~~bidirections~~ interface for use with the EMMA 2 software.		Follow these instructions to install the RSPerl bidirectional interface for use with the EMMA 2 software.

	The RSPerl software is written and copyrighted by Duncan Temple Lang and distributed under the FreeBSD license.		The original RSPerl software is written and copyrighted by Duncan Temple Lang and distributed under the FreeBSD license.
	See the RSPerl homepage: http://www.omegahat.org/RSPerl/index.html		See the RSPerl homepage: http://www.omegahat.org/RSPerl/index.html

	~~'''Please report any problems related to RSPerl to the omega help mailing list: omega-help@eeyore.ucdavis.edu'''~~

	If you also want to use RSPerl for another purpose (e.g. Perl from R), you should also consider the original installation instructions.		If you also want to use RSPerl for another purpose (e.g. Perl from R), you should also consider the original installation instructions.
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	You can also he original package ca nbe downloaded from:		You can also he original package ca nbe downloaded from:
	http://www.omegahat.org/RSPerl/index.html.		http://www.omegahat.org/RSPerl/index.html

	Version 0.9 has been locally tested with		Version 0.92 has been locally tested with

	* FreeBSD 5.4		* FreeBSD 5.4
	* Solaris 9 and 10 (sparc and i386)		* Solaris 9 and 10 (sparc and i386)
	* R 2.2.~~1, R~~ 2~~.3.0~~ (~~test~~ on sparc solaris only)		* R 2.7.2 (on sparc and i386 solaris using Sun Pro 12 compilers only)
	* Perl 5.8.x		* Perl 5.8.8

	(Versions of RSPerl prior to 0.9-1 had a bug that prevents EMMA to function with it)		(Versions of RSPerl prior to 0.9-1 had a bug that prevents EMMA to function with it)
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	<pre><nowiki>		<pre><nowiki>
	radmin# R CMD INSTALL --configure-args='--with-in-perl --with-modules=""' RSPerl_X.tar.gz		radmin# R CMD INSTALL -c --configure-args='--with-in-perl --with-modules=""' RSPerl_X.tar.gz
	</nowiki></pre>		</nowiki></pre>