IGetDBWiki/EmmaExport - Revision history

Alu: /* EMMA Export to IGetDB */

2011-10-28T13:36:40Z

EMMA Export to IGetDB

← Older revision		Revision as of 15:36, 28 October 2011
Line 4:		Line 4:
	After selecting your experiment you need to click on "analyse" to get to the pipeline page:		After selecting your experiment you need to click on "analyse" to get to the pipeline page:

	[[~~Image~~:~~IGetDBWiki$$EmmaExport$~~igetdb-import1.jpg]]		[[File:igetdb-import1.jpg]]

	Once on the pipeline page you select the "BioMart Export" pipeline and press the "select" button:		Once on the pipeline page you select the "BioMart Export" pipeline and press the "select" button:

	[[~~Image~~:~~IGetDBWiki$$EmmaExport$~~igetdb-import2.jpg]]		[[File:igetdb-import2.jpg]]

	As you can see in the next image, the exporter warns that no arrays are selected. You correct this by first selecting the tick-box next "Show advanced options"(1) and then press the button "Select Datasets"(2):		As you can see in the next image, the exporter warns that no arrays are selected. You correct this by first selecting the tick-box next "Show advanced options"(1) and then press the button "Select Datasets"(2):

	[[~~Image~~:~~IGetDBWiki$$EmmaExport$~~igetdb-import3.jpg]]		[[File:igetdb-import3.jpg]]

	This brings you to next page where you select a significance-test (1) and then press "select"(2):		This brings you to next page where you select a significance-test (1) and then press "select"(2):

	[[~~Image~~:~~IGetDBWiki$$EmmaExport$~~igetdb-import4.jpg]]		[[File:igetdb-import4.jpg]]

	Finally, click on "Compute \& View Results" to submit the job:		Finally, click on "Compute \& View Results" to submit the job:
	[[~~Image~~:~~IGetDBWiki$$EmmaExport$~~igetdb-import5.jpg]]		[[File:igetdb-import5.jpg]]

	Running the exporter script will take some time depending on the size of the experiment. In the end, the job status should say something like "Biomart export was sucessful. Data was stored in database".		Running the exporter script will take some time depending on the size of the experiment. In the end, the job status should say something like "Biomart export was sucessful. Data was stored in database".

Admin: 3 revisions

2011-10-26T06:16:42Z

3 revisions

← Older revision	Revision as of 08:16, 26 October 2011
(No difference)

imported>KaiRunte at 14:49, 11 December 2006

2006-12-11T14:49:28Z

← Older revision		Revision as of 16:49, 11 December 2006
Line 4:		Line 4:
	After selecting your experiment you need to click on "analyse" to get to the pipeline page:		After selecting your experiment you need to click on "analyse" to get to the pipeline page:

	[[Image:IGetDBWiki$$EmmaExport$igetdb-import1.~~png~~]]		[[Image:IGetDBWiki$$EmmaExport$igetdb-import1.jpg]]

	Once on the pipeline page you select the "BioMart Export" pipeline and press the "select" button:		Once on the pipeline page you select the "BioMart Export" pipeline and press the "select" button:

	[[Image:IGetDBWiki$$EmmaExport$igetdb-import2.~~png~~]]		[[Image:IGetDBWiki$$EmmaExport$igetdb-import2.jpg]]

	As you can see in the next image, the exporter warns that no arrays are selected. You correct this by first selecting the tick-box next "Show advanced options"(1) and then press the button "Select Datasets"(2):		As you can see in the next image, the exporter warns that no arrays are selected. You correct this by first selecting the tick-box next "Show advanced options"(1) and then press the button "Select Datasets"(2):

	[[Image:IGetDBWiki$$EmmaExport$igetdb-import3.~~png~~]]		[[Image:IGetDBWiki$$EmmaExport$igetdb-import3.jpg]]

	This brings you to next page where you select a significance-test (1) and then press "select"(2):		This brings you to next page where you select a significance-test (1) and then press "select"(2):

	[[Image:IGetDBWiki$$EmmaExport$igetdb-import4.~~png~~]]		[[Image:IGetDBWiki$$EmmaExport$igetdb-import4.jpg]]

	Finally, click on "Compute \& View Results" to submit the job:		Finally, click on "Compute \& View Results" to submit the job:
	[[Image:IGetDBWiki$$EmmaExport$igetdb-import5.~~png~~]]		[[Image:IGetDBWiki$$EmmaExport$igetdb-import5.jpg]]

	Running the exporter script will take some time depending on the size of the experiment. In the end, the job status should say something like "Biomart export was sucessful. Data was stored in database".		Running the exporter script will take some time depending on the size of the experiment. In the end, the job status should say something like "Biomart export was sucessful. Data was stored in database".

imported>KaiRunte at 14:13, 11 December 2006

2006-12-11T14:13:38Z

← Older revision		Revision as of 16:13, 11 December 2006
Line 4:		Line 4:
	After selecting your experiment you need to click on "analyse" to get to the pipeline page:		After selecting your experiment you need to click on "analyse" to get to the pipeline page:

	[[~~Media~~:IGetDBWiki$$EmmaExport$igetdb-import1]]		[[Image:IGetDBWiki$$EmmaExport$igetdb-import1.png]]

	Once on the pipeline page you select the "BioMart Export" pipeline and press the "select" button:		Once on the pipeline page you select the "BioMart Export" pipeline and press the "select" button:

	[[~~Media~~:IGetDBWiki$$EmmaExport$igetdb-import2]]		[[Image:IGetDBWiki$$EmmaExport$igetdb-import2.png]]

	As you can see in the next image, the exporter warns that no arrays are selected. You correct this by first selecting the tick-box next "Show advanced options"(1) and then press the button "Select Datasets"(2):		As you can see in the next image, the exporter warns that no arrays are selected. You correct this by first selecting the tick-box next "Show advanced options"(1) and then press the button "Select Datasets"(2):

	[[~~Media~~:IGetDBWiki$$EmmaExport$igetdb-import3]]		[[Image:IGetDBWiki$$EmmaExport$igetdb-import3.png]]

	This brings you to next page where you select a significance-test (1) and then press "select"(2):		This brings you to next page where you select a significance-test (1) and then press "select"(2):

	[[~~Media~~:IGetDBWiki$$EmmaExport$igetdb-import4]]		[[Image:IGetDBWiki$$EmmaExport$igetdb-import4.png]]

	Finally, click on "Compute \& View Results" to submit the job:		Finally, click on "Compute \& View Results" to submit the job:
	[[~~Media~~:IGetDBWiki$$EmmaExport$igetdb-import5]]		[[Image:IGetDBWiki$$EmmaExport$igetdb-import5.png]]

	Running the exporter script will take some time depending on the size of the experiment. In the end, the job status should say something like "Biomart export was sucessful. Data was stored in database".		Running the exporter script will take some time depending on the size of the experiment. In the end, the job status should say something like "Biomart export was sucessful. Data was stored in database".

imported>KaiRunte at 14:11, 11 December 2006

2006-12-11T14:11:54Z

New page

__NOTOC__
= EMMA Export to IGetDB =

After selecting your experiment you need to click on "analyse" to get to the pipeline page:

[[Media:IGetDBWiki$$EmmaExport$igetdb-import1]]

Once on the pipeline page you select the "BioMart Export" pipeline and press the "select" button:

[[Media:IGetDBWiki$$EmmaExport$igetdb-import2]]

As you can see in the next image, the exporter warns that no arrays are selected. You correct this by first selecting the tick-box next "Show advanced options"(1) and then press the button "Select Datasets"(2):

[[Media:IGetDBWiki$$EmmaExport$igetdb-import3]]

This brings you to next page where you select a significance-test (1) and then press "select"(2):

[[Media:IGetDBWiki$$EmmaExport$igetdb-import4]]

Finally, click on "Compute \& View Results" to submit the job:
[[Media:IGetDBWiki$$EmmaExport$igetdb-import5]]

Running the exporter script will take some time depending on the size of the experiment. In the end, the job status should say something like "Biomart export was sucessful. Data was stored in database".