Image and data upload - Revision history

Admin: 17 revisions

2011-10-26T06:16:38Z

17 revisions

← Older revision	Revision as of 08:16, 26 October 2011
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imported>JomunaChoudhuri at 14:20, 23 August 2005

2005-08-23T14:20:37Z

← Older revision		Revision as of 16:20, 23 August 2005
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	__NOTOC__		__NOTOC__
	This page shows all images and data files that were uploaded for the microarray hybridizations in your project. If you want to submit new images and data files for a scanned hybridized microarray ~~push~~ the "upload image and data files" button on the upper left side of the page. Fill out '''every''' field marked with a red star ( '''required fields''' ) on the opening page. You are able to upload two single images (one for each channel) or one ~~dualimage~~.~~For this~~ click on the ~~mentioined~~ button.If you scanned the microarray with the Imagene software you have to upload '''two''' seperate data files~~, too~~. If you scanned with the [[GenePix]] software do '''not''' fill in the data file form for '''channel 2'''.~~For~~ this click on the mentioned button, too. An error message will appear on top of the page if you submitted data in the wrong format or did not fill in all ~~reqired~~ fields. The fields that were filled in with the wrong data ~~are~~ highlighted in red.		This page shows all images and data files that were uploaded for the microarray hybridizations in your project. If you want to submit new images and data files for a scanned hybridized microarray click on the "upload image and data files" button on the upper left side of the page. Fill out '''every''' field marked with a red star ('''required fields''') on the opening page. You are able to upload either two single images (one for each channel) or one dual image. In each case, click on the corresponding button. If you have scanned the microarray with the Imagene software you have to upload '''two''' seperate data files aswell. If you have scanned with the GenePix software do '''not''' fill out the data file form for '''channel 2'''. In this case click on the mentioned button, too. An error message will appear on top of the page if you have submitted data in the wrong format or did not fill out all required fields. The fields that were filled out with the wrong data will be highlighted in red.

	== Required fields ==		== Required fields ==

	~~The~~ fields that have to be filled for ~~the~~ image upload ~~are~~		These are the required fields that have to be filled out for image upload:

	* Slide-ID, choose the microarray you scanned and you intend to upload images and data files for.(Make sure that you only choose a slide-ID that ~~was~~ assigned to you)		* '''Slide-ID''': choose the microarray you have already scanned and which you intend to upload images and data files for. (Make sure that you only choose a slide-ID that has been assigned to you)
	* Date, the date the image and data files were uploaded		* '''Date''': the date the image and data files were uploaded
	* Image type, whether single or dual image is uploaded. Default is single ~~images~~		* '''Image type''': whether single or dual image is uploaded. Default is single image
	* Scan software, whether ~~imagene~~ or ~~genepix~~ data file is uploaded.Default is Imagene		* '''Scan software''': whether Imagene or GenePix data file is uploaded. Default is Imagene
	* Pixel size, (has to be filled in, typically 10, default is "None")		* '''Pixel size''': the pixel size of the uploaded images (has to be filled out, typically 10, default is "None")
	* Channel, the channel the microarray was scanned with (already filled in, default is "None")		* '''Channel''': the channel the microarray was scanned with (already filled out, default is "None")
	* Location of image file, the path to the image file on your computer. Note that only Tiff-format is allowed		* '''Location of image file''': the path to the image file on your computer. Note that only Tiff-format is allowed
	* Location of the data file, the path to the data file on your computer		* '''Location of the data file''': the path to the data file on your computer

	== Optional fields ==		== Optional fields ==

	You can also upload some additional data for the images		You can also upload some additional data for the images:

	* Laser power [%], the power of the laser used for microarray scanning		* '''Laser power [%]''': the power of the laser used for microarray scanning
	* PMT [%], the photomultiplier values		* '''PMT [%]''': the photomultiplier values
	* Scan rate [%], the rate of scanning		* '''Scan rate [%]''': the rate of scanning
	* Remarks, remarks of the scanning process for an image		* '''Remarks''': remarks of the scanning process for an image
	* Description, description of the data files		* '''Description''': description of the data files

	=== File formats ===		=== File formats ===

	The format for the image files the ArrayLIMSWiki:ArrayLIMS system allows is the Tiff format. Because of its non-lossy compression it best suits the purpose of scientific work.		The format for the image files the [[ArrayLIMSWiki\|ArrayLIMS]] system allows is the '''Tiff''' format. Because of its non-lossy compression it best suits the purpose of scientific work.

	The supported format for the uploaded data files are the ~~imagene~~ and the ~~genepix format~~. If ~~imagene~~ is used two data files ~~has~~ to be ~~uplaoded~~. In case of the ~~genepix~~ format only one data file has to be uploaded.		The supported format for the uploaded data files are the corresponding Imagene and the GenePix formats. If Imagene is used, two data files have to be uploaded. In case of the GenePix format, only one data file has to be uploaded.

imported>TimKahlke at 15:27, 1 July 2005

2005-07-01T15:27:38Z

← Older revision		Revision as of 17:27, 1 July 2005
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	__NOTOC__		__NOTOC__
	This page shows all images and data files that were uploaded for the microarray hybridizations in your project. If you want to submit new images and data files for a scanned hybridized microarray push the "upload image and data files" button on the upper ~~right~~ side of the page. Fill out '''every''' field marked with a red star ( '''required fields''' ) on the opening page. You ~~'''always''' have~~ to upload ~~'''~~two~~'''~~ images (one for each channel). If you scanned the microarray with the Imagene software you have to upload '''two''' seperate data files, too. If you scanned with the [[GenePix]] software do '''not''' fill in the data file form for '''channel 2'''. ~~Just fill out~~ the ~~data file form for '''channel 1'''~~ .An error message will appear on top of the page if you submitted data in the wrong format or did not fill in all reqired fields. The fields that were filled in with the wrong data are highlighted in red~~. Please notice that select boxes have to be set again after submitting wrong data~~.		This page shows all images and data files that were uploaded for the microarray hybridizations in your project. If you want to submit new images and data files for a scanned hybridized microarray push the "upload image and data files" button on the upper left side of the page. Fill out '''every''' field marked with a red star ( '''required fields''' ) on the opening page. You are able to upload two single images (one for each channel) or one dualimage.For this click on the mentioined button.If you scanned the microarray with the Imagene software you have to upload '''two''' seperate data files, too. If you scanned with the [[GenePix]] software do '''not''' fill in the data file form for '''channel 2'''.For this click on the mentioned button, too. An error message will appear on top of the page if you submitted data in the wrong format or did not fill in all reqired fields. The fields that were filled in with the wrong data are highlighted in red.

	== Required fields ==		== Required fields ==
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	* Slide-ID, choose the microarray you scanned and you intend to upload images and data files for.(Make sure that you only choose a slide-ID that was assigned to you)		* Slide-ID, choose the microarray you scanned and you intend to upload images and data files for.(Make sure that you only choose a slide-ID that was assigned to you)
	* Date, the date the image and data files were uploaded		* Date, the date the image and data files were uploaded
			* Image type, whether single or dual image is uploaded. Default is single images
			* Scan software, whether imagene or genepix data file is uploaded.Default is Imagene
	* Pixel size, (has to be filled in, typically 10, default is "None")		* Pixel size, (has to be filled in, typically 10, default is "None")
	* Channel, the channel the microarray was scanned with (already filled in, default is "None")		* Channel, the channel the microarray was scanned with (already filled in, default is "None")
	* File format, the format of the image. Usually this will be .tiff (already filled in, default is tiff)		* Location of image file, the path to the image file on your computer. Note that only Tiff-format is allowed
	* Location of image file, the path to the image file on your computer

	~~The fields~~ that ~~have to be filled for the data file upload are~~

	* Used software, the software the microarray was scanned with (already filled in, default is ~~"None")~~
	* Location of the data file, the path to the data file on your computer		* Location of the data file, the path to the data file on your computer

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	* Scan rate [%], the rate of scanning		* Scan rate [%], the rate of scanning
	* Remarks, remarks of the scanning process for an image		* Remarks, remarks of the scanning process for an image

	~~You can also upload some additional data for the data files~~

	* Description, description of the data files		* Description, description of the data files

imported>VirginieMittard at 15:53, 25 April 2005

2005-04-25T15:53:20Z

← Older revision		Revision as of 17:53, 25 April 2005
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	=== File formats ===		=== File formats ===

	The format for the image files the ArrayLIMSWiki:ArrayLIMS system ~~aloows~~ is the Tiff format. Because of its non-lossy compression it best suits the purpose of scientific work.		The format for the image files the ArrayLIMSWiki:ArrayLIMS system allows is the Tiff format. Because of its non-lossy compression it best suits the purpose of scientific work.

	The supported format for the uploaded data files are the imagene and the genepix format. If imagene is used two data files has to be uplaoded. In case of the genepix format only one data file has to be uploaded.		The supported format for the uploaded data files are the imagene and the genepix format. If imagene is used two data files has to be uplaoded. In case of the genepix format only one data file has to be uploaded.

imported>TimKahlke at 11:15, 20 April 2005

2005-04-20T11:15:33Z

← Older revision		Revision as of 13:15, 20 April 2005
Line 33:		Line 33:
	=== File formats ===		=== File formats ===

	The format for the image files the ArrayLIMS system aloows is the Tiff format. Because of its non-lossy compression it best suits the purpose of scientific work.		The format for the image files the ArrayLIMSWiki:ArrayLIMS system aloows is the Tiff format. Because of its non-lossy compression it best suits the purpose of scientific work.

	The supported format for the uploaded data files are the imagene and the genepix format. If imagene is used two data files has to be uplaoded. In case of the genepix format only one data file has to be uploaded.		The supported format for the uploaded data files are the imagene and the genepix format. If imagene is used two data files has to be uplaoded. In case of the genepix format only one data file has to be uploaded.

imported>TimKahlke at 11:14, 20 April 2005

2005-04-20T11:14:52Z

← Older revision		Revision as of 13:14, 20 April 2005
Line 31:		Line 31:
	* Description, description of the data files		* Description, description of the data files

	=== File formats===		=== File formats ===

	The format for the image files the ArrayLIMS system aloows is the Tiff format. Because of its non-lossy compression it best suits the purpose of scientific work.		The format for the image files the ArrayLIMS system aloows is the Tiff format. Because of its non-lossy compression it best suits the purpose of scientific work.

	The supported format for the uploaded data files are the imagene and the genepix format. If imagene is used two data files has to be uplaoded. In case of the genepix format only one data file has to be uploaded.		The supported format for the uploaded data files are the imagene and the genepix format. If imagene is used two data files has to be uplaoded. In case of the genepix format only one data file has to be uploaded.

imported>TimKahlke at 11:14, 20 April 2005

2005-04-20T11:14:33Z

← Older revision		Revision as of 13:14, 20 April 2005
Line 32:		Line 32:

	=== File formats===		=== File formats===

	The format for the image files the ArrayLIMS system aloows is the Tiff format. Because of its non-lossy compression it best suits the purpose of scientific work.		The format for the image files the ArrayLIMS system aloows is the Tiff format. Because of its non-lossy compression it best suits the purpose of scientific work.

	The supported format for the uploaded data files are the imagene and the genepix format. If imagene is used two data files has to be uplaoded. In case of the genepix format only one data file has to be uploaded.		The supported format for the uploaded data files are the imagene and the genepix format. If imagene is used two data files has to be uplaoded. In case of the genepix format only one data file has to be uploaded.

imported>TimKahlke at 11:14, 20 April 2005

2005-04-20T11:14:10Z

← Older revision		Revision as of 13:14, 20 April 2005
Line 1:		Line 1:
	__NOTOC__		__NOTOC__
	This page shows all images and data files that were uploaded for the microarray hybridizations in your project. If you want to submit new images and data files for a scanned hybridized microarray push the "upload image and data files" button on the upper right side of the page. Fill out '''every''' field marked with a red star ( '''required fields''' ) on the opening page. You '''always''' have to upload '''two''' images (one for each channel). If you scanned the microarray with the Imagene software you have to upload '''two''' seperate data files, too. If you scanned with the [[GenePix]] software do '''not''' fill in the data file form for '''channel 2'''. Just fill out the data file form for'''channel 1''' .An error message will appear on top of the page if you submitted data in the wrong format or did not fill in all reqired fields. The fields that were filled in with the wrong data are highlighted in red. Please notice that select boxes have to be set again after submitting wrong data.		This page shows all images and data files that were uploaded for the microarray hybridizations in your project. If you want to submit new images and data files for a scanned hybridized microarray push the "upload image and data files" button on the upper right side of the page. Fill out '''every''' field marked with a red star ( '''required fields''' ) on the opening page. You '''always''' have to upload '''two''' images (one for each channel). If you scanned the microarray with the Imagene software you have to upload '''two''' seperate data files, too. If you scanned with the [[GenePix]] software do '''not''' fill in the data file form for '''channel 2'''. Just fill out the data file form for '''channel 1''' .An error message will appear on top of the page if you submitted data in the wrong format or did not fill in all reqired fields. The fields that were filled in with the wrong data are highlighted in red. Please notice that select boxes have to be set again after submitting wrong data.

	== Required fields ==		== Required fields ==
Line 30:		Line 30:

	* Description, description of the data files		* Description, description of the data files

			=== File formats===
			The format for the image files the ArrayLIMS system aloows is the Tiff format. Because of its non-lossy compression it best suits the purpose of scientific work.

			The supported format for the uploaded data files are the imagene and the genepix format. If imagene is used two data files has to be uplaoded. In case of the genepix format only one data file has to be uploaded.

imported>TimKahlke at 10:42, 18 April 2005

2005-04-18T10:42:51Z

← Older revision		Revision as of 12:42, 18 April 2005
Line 1:		Line 1:
	__NOTOC__		__NOTOC__

	This page shows all images and data files that were uploaded for the microarray hybridizations in your project. If you want to submit new images and data files for a scanned hybridized microarray push the "upload image and data files" button on the upper right side of the page. Fill out '''every''' field marked with a red star ( '''required fields''' ) on the opening page. You '''always''' have to upload '''two''' images (one for each channel). If you scanned the microarray with the Imagene software you have to upload '''two''' seperate data files, too. If you scanned with the [[GenePix]] software do '''not''' fill in the data file form for '''channel 2'''. Just fill out the data file form for'''channel 1''' .An error message will appear on top of the page if you submitted data in the wrong format or did not fill in all reqired fields. The fields that were filled in with the wrong data are highlighted in red. Please notice that select boxes have to be set again after submitting wrong data.		This page shows all images and data files that were uploaded for the microarray hybridizations in your project. If you want to submit new images and data files for a scanned hybridized microarray push the "upload image and data files" button on the upper right side of the page. Fill out '''every''' field marked with a red star ( '''required fields''' ) on the opening page. You '''always''' have to upload '''two''' images (one for each channel). If you scanned the microarray with the Imagene software you have to upload '''two''' seperate data files, too. If you scanned with the [[GenePix]] software do '''not''' fill in the data file form for '''channel 2'''. Just fill out the data file form for'''channel 1''' .An error message will appear on top of the page if you submitted data in the wrong format or did not fill in all reqired fields. The fields that were filled in with the wrong data are highlighted in red. Please notice that select boxes have to be set again after submitting wrong data.

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	* Description, description of the data files		* Description, description of the data files
	* Normalized, whether the data file was normalized or not (already filled in, default is " -No- ")
	* Filtered, whether the data file was filtered or not (already filled in, default is " -No- ")

imported>HelgeKuester at 15:44, 14 May 2004

2004-05-14T15:44:49Z

← Older revision		Revision as of 17:44, 14 May 2004
Line 1:		Line 1:
	__NOTOC__		__NOTOC__

	This page shows all images and data files that were uploaded for the ~~slides~~ in your project. If you want to submit new images and data files for a scanned hybridized microarray push the "upload image and data files" button on the upper right of the page. Fill out '''every''' field marked with a red star ( '''required fields''' ) on the opening page. You '''always''' have to upload '''two''' images (one for ~~every~~ channel). If you scanned the microarray with the ~~imagene~~ software you have to upload '''two''' data files too. If you scanned with the ~~genepix~~ software do '''not''' fill the data file form for '''channel 2'''. Just fill out the data file form for'''channel 1''' .An error message will appear on top of the page if you submitted data in the wrong format or did not fill all reqired fields. The fields that were filled with the wrong data are highlighted in red. Please notice, that select boxes have to be set again after submitting wrong data.		This page shows all images and data files that were uploaded for the microarray hybridizations in your project. If you want to submit new images and data files for a scanned hybridized microarray push the "upload image and data files" button on the upper right side of the page. Fill out '''every''' field marked with a red star ( '''required fields''' ) on the opening page. You '''always''' have to upload '''two''' images (one for each channel). If you scanned the microarray with the Imagene software you have to upload '''two''' seperate data files, too. If you scanned with the [[GenePix]] software do '''not''' fill in the data file form for '''channel 2'''. Just fill out the data file form for'''channel 1''' .An error message will appear on top of the page if you submitted data in the wrong format or did not fill in all reqired fields. The fields that were filled in with the wrong data are highlighted in red. Please notice that select boxes have to be set again after submitting wrong data.

	== Required fields ==		== Required fields ==
Line 7:		Line 7:
	The fields that have to be filled for the image upload are		The fields that have to be filled for the image upload are

	* Slide-ID, choose the ~~slide~~ you scanned and you ~~want~~ to upload images and data files of.(~~Just~~ choose a slide that ~~were~~ assigned to you )		* Slide-ID, choose the microarray you scanned and you intend to upload images and data files for.(Make sure that you only choose a slide-ID that was assigned to you)
	* Date, the date the ~~images~~ and data files ~~are~~ uploaded		* Date, the date the image and data files were uploaded
	* Pixel size, (~~always~~ filled, ~~Default~~ is "None")		* Pixel size, (has to be filled in, typically 10, default is "None")
	* Channel, the channel the microarray ~~were~~ scanned with (is already filled, ~~Default~~ is "None")		* Channel, the channel the microarray was scanned with (already filled in, default is "None")
	* File format, the format of the image. Usually ~~it is~~ .tiff (is already filled~~. Default~~ is tiff)		* File format, the format of the image. Usually this will be .tiff (already filled in, default is tiff)
	* Location of image file, the path to the image file on your computer		* Location of image file, the path to the image file on your computer

	The fields that have to be filled for the data file upload are		The fields that have to be filled for the data file upload are

	* Used software, the software the microarray was scanned with (is already filled, ~~Default~~ is "None")		* Used software, the software the microarray was scanned with (already filled in, default is "None")
	* Location of the data file, the path to the data file on your computer		* Location of the data file, the path to the data file on your computer

Line 23:		Line 23:
	You can also upload some additional data for the images		You can also upload some additional data for the images

	* Laser power [%], the power of the laser ~~the~~ microarray ~~was scanned with~~		* Laser power [%], the power of the laser used for microarray scanning
	* PMT [%]		* PMT [%], the photomultiplier values
	* Scan rate [%]		* Scan rate [%], the rate of scanning
	* Remarks, remarks of the scanning process for an image		* Remarks, remarks of the scanning process for an image

	You can also upload some additional data for the data files		You can also upload some additional data for the data files

	* Description, description of the data ~~file~~		* Description, description of the data files
	* Normalized, ~~wether~~ the ~~image~~ was normalized or not (already filled~~. Default~~ is " -No- ")		* Normalized, whether the data file was normalized or not (already filled in, default is " -No- ")
	* Filtered, ~~wether~~ the ~~image~~ was filtered or not (already filled~~. Default~~ is " -No- ")		* Filtered, whether the data file was filtered or not (already filled in, default is " -No- ")