MeltDBWiki/DatabaseSearch - Revision history

Nkessler at 15:04, 31 October 2011

2011-10-31T15:04:57Z

← Older revision		Revision as of 17:04, 31 October 2011
Line 7:		Line 7:
	* Select 'Run Analysis' from the list of possible actions.		* Select 'Run Analysis' from the list of possible actions.

	[[Image:MeltDBWiki$$~~RIManual~~$~~rimanual~~.png]]		[[Image:MeltDBWiki$$DatabaseSearch$runtool1.png]]

	* A list of applicable tools defined in your MeltDB project is presented. Select e.g. the 'CosineGMD' tool to perform a mass spectral search in the public Golm Metabolite Database. The database contains GC/MS mass spectra together with textual descriptions of the measured substances. For several mass spectra in the GMD the Retention Indices according to Kovat's method are given. Hit the 'Submit Job' button.		* A list of applicable tools defined in your MeltDB project is presented. Select e.g. the 'CosineGMD' tool to perform a mass spectral search in the public Golm Metabolite Database. The database contains GC/MS mass spectra together with textual descriptions of the measured substances. For several mass spectra in the GMD the Retention Indices according to Kovat's method are given. Hit the 'Submit Job' button.

Nkessler at 15:04, 31 October 2011

2011-10-31T15:04:14Z

← Older revision		Revision as of 17:04, 31 October 2011
Line 7:		Line 7:
	* Select 'Run Analysis' from the list of possible actions.		* Select 'Run Analysis' from the list of possible actions.

	[[MeltDBWiki$$RIManual$rimanual.png]]		[[Image:MeltDBWiki$$RIManual$rimanual.png]]

	* A list of applicable tools defined in your MeltDB project is presented. Select e.g. the 'CosineGMD' tool to perform a mass spectral search in the public Golm Metabolite Database. The database contains GC/MS mass spectra together with textual descriptions of the measured substances. For several mass spectra in the GMD the Retention Indices according to Kovat's method are given. Hit the 'Submit Job' button.		* A list of applicable tools defined in your MeltDB project is presented. Select e.g. the 'CosineGMD' tool to perform a mass spectral search in the public Golm Metabolite Database. The database contains GC/MS mass spectra together with textual descriptions of the measured substances. For several mass spectra in the GMD the Retention Indices according to Kovat's method are given. Hit the 'Submit Job' button.

Nkessler at 15:03, 31 October 2011

2011-10-31T15:03:49Z

← Older revision		Revision as of 17:03, 31 October 2011
Line 7:		Line 7:
	* Select 'Run Analysis' from the list of possible actions.		* Select 'Run Analysis' from the list of possible actions.

	[[MeltDBWiki$$RIManual$rimanual.png ]]		[[MeltDBWiki$$RIManual$rimanual.png]]

	* A list of applicable tools defined in your MeltDB project is presented. Select e.g. the 'CosineGMD' tool to perform a mass spectral search in the public Golm Metabolite Database. The database contains GC/MS mass spectra together with textual descriptions of the measured substances. For several mass spectra in the GMD the Retention Indices according to Kovat's method are given. Hit the 'Submit Job' button.		* A list of applicable tools defined in your MeltDB project is presented. Select e.g. the 'CosineGMD' tool to perform a mass spectral search in the public Golm Metabolite Database. The database contains GC/MS mass spectra together with textual descriptions of the measured substances. For several mass spectra in the GMD the Retention Indices according to Kovat's method are given. Hit the 'Submit Job' button.

Nkessler at 15:03, 31 October 2011

2011-10-31T15:03:34Z

← Older revision		Revision as of 17:03, 31 October 2011
Line 7:		Line 7:
	* Select 'Run Analysis' from the list of possible actions.		* Select 'Run Analysis' from the list of possible actions.

	[[~~Image:~~MeltDBWiki$$~~DatabaseSearch~~$~~runtool1~~.png]]		[[MeltDBWiki$$RIManual$rimanual.png ]]

	* A list of applicable tools defined in your MeltDB project is presented. Select e.g. the 'CosineGMD' tool to perform a mass spectral search in the public Golm Metabolite Database. The database contains GC/MS mass spectra together with textual descriptions of the measured substances. For several mass spectra in the GMD the Retention Indices according to Kovat's method are given. Hit the 'Submit Job' button.		* A list of applicable tools defined in your MeltDB project is presented. Select e.g. the 'CosineGMD' tool to perform a mass spectral search in the public Golm Metabolite Database. The database contains GC/MS mass spectra together with textual descriptions of the measured substances. For several mass spectra in the GMD the Retention Indices according to Kovat's method are given. Hit the 'Submit Job' button.

Admin: 3 revisions

2011-10-26T06:14:32Z

3 revisions

← Older revision	Revision as of 08:14, 26 October 2011
(No difference)

imported>HeikoNeuweger at 21:47, 2 March 2009

2009-03-02T21:47:58Z

← Older revision		Revision as of 23:47, 2 March 2009
Line 20:		Line 20:

	[[Image:MeltDBWiki$$DatabaseSearch$jobstatus2.png]]		[[Image:MeltDBWiki$$DatabaseSearch$jobstatus2.png]]

			* After the computation is finished, use e.g. the 'Show TIC' or 'Show 2D' action to navigate to the detected peaks in your chromatograms. MeltDB creates Observations for each peak having a mass spectrum which matches entries in the Golm Metabolite database. The closer the score is to 1.0, the more similiar are the mass spectra. According to the configuration of the CosineGMD tool, several matches may be stored in MeltDB and have been associated to the individual peaks.

	[[Image:MeltDBWiki$$DatabaseSearch$jobstatus3.png]]		[[Image:MeltDBWiki$$DatabaseSearch$jobstatus3.png]]

	* After the computation is finished, use e.g. the 'Show TIC' or 'Show 2D' action to navigate to the detected peaks in your chromatograms. MeltDB creates Observations for each peak having a mass spectrum which matches entries in the Golm Metabolite database. The closer the score is to 1.0, the more similiar are the mass spectra. According to the configuration of the CosineGMD tool, several matches may be stored in MeltDB and have been associated to the individual peaks.

imported>HeikoNeuweger at 18:33, 2 March 2009

2009-03-02T18:33:47Z

← Older revision		Revision as of 20:33, 2 March 2009
Line 4:		Line 4:
	== Perform preprocessing methods using MeltDB: [[DatabaseSearch]] ==		== Perform preprocessing methods using MeltDB: [[DatabaseSearch]] ==

	* After logging in to MeltDB, navigate to your experiment or chromatogram.		* After logging in to MeltDB, navigate to your experiment or chromatogram. Make sure that peaks have already been predicted for your datasets.
	* Select 'Run Analysis' from the list of possible actions.		* Select 'Run Analysis' from the list of possible actions.

	[[Image:MeltDBWiki$$DatabaseSearch$runtool1.png]]		[[Image:MeltDBWiki$$DatabaseSearch$runtool1.png]]

	* A list of applicable tools defined in your MeltDB project is presented. Select CosineGMD mass ~~pectral sercah~~ in the public Golm Metabolite Database.		* A list of applicable tools defined in your MeltDB project is presented. Select e.g. the 'CosineGMD' tool to perform a mass spectral search in the public Golm Metabolite Database. The database contains GC/MS mass spectra together with textual descriptions of the measured substances. For several mass spectra in the GMD the Retention Indices according to Kovat's method are given. Hit the 'Submit Job' button.

	[[Image:MeltDBWiki$$DatabaseSearch$runtool2.png]]		[[Image:MeltDBWiki$$DatabaseSearch$runtool2.png]]
Line 23:		Line 23:
	[[Image:MeltDBWiki$$DatabaseSearch$jobstatus3.png]]		[[Image:MeltDBWiki$$DatabaseSearch$jobstatus3.png]]

	* After the computation is finished, use e.g. the 'Show TIC' or 'Show 2D' action to ~~review~~ the ~~computed~~ peaks. MeltDB creates Observations for each peak having a mass spectrum which matches entries in the Golm Metabolite database. The closer the score is to 1.0, the more similiar are the mass spectra.		* After the computation is finished, use e.g. the 'Show TIC' or 'Show 2D' action to navigate to the detected peaks in your chromatograms. MeltDB creates Observations for each peak having a mass spectrum which matches entries in the Golm Metabolite database. The closer the score is to 1.0, the more similiar are the mass spectra. According to the configuration of the CosineGMD tool, several matches may be stored in MeltDB and have been associated to the individual peaks.

imported>HeikoNeuweger at 18:27, 2 March 2009

2009-03-02T18:27:53Z

New page

__NOTOC__


== Perform preprocessing methods using MeltDB: [[DatabaseSearch]] ==

* After logging in to MeltDB, navigate to your experiment or chromatogram.
* Select 'Run Analysis' from the list of possible actions.

[[Image:MeltDBWiki$$DatabaseSearch$runtool1.png]]

* A list of applicable tools defined in your MeltDB project is presented. Select CosineGMD mass pectral sercah in the public Golm Metabolite Database.

[[Image:MeltDBWiki$$DatabaseSearch$runtool2.png]]

* The job is submitted to a compute cluster and you can observe its progress via the 'Show job status' dialog.

[[Image:MeltDBWiki$$DatabaseSearch$jobstatus1.png]]

* Open the respective job from the list and review the state of the computation. State 5 represents finished jobs, state 3 represents running and state 6 represents failed jobs. A message regarding the current status provides additional information.

[[Image:MeltDBWiki$$DatabaseSearch$jobstatus2.png]]

[[Image:MeltDBWiki$$DatabaseSearch$jobstatus3.png]]

* After the computation is finished, use e.g. the 'Show TIC' or 'Show 2D' action to review the computed peaks. MeltDB creates Observations for each peak having a mass spectrum which matches entries in the Golm Metabolite database. The closer the score is to 1.0, the more similiar are the mass spectra.