MeltDBWiki/HowTos - Revision history

Nkessler at 15:12, 31 October 2011

2011-10-31T15:12:05Z

← Older revision		Revision as of 17:12, 31 October 2011
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	* To analyze the publicly available datasets in MeltDB, please select 'Browse/Analyse an existing Experiment' from the start page.		* To analyze the publicly available datasets in MeltDB, please select 'Browse/Analyse an existing Experiment' from the start page.

	[[Image:MeltDBWiki$$~~HowTos~~$startpage.png]]		[[Image:MeltDBWiki$$UploadChromas$startpage.png]]

	* Select the 'Three carbon sources' experiment by clicking on the folder icon to the left.		* Select the 'Three carbon sources' experiment by clicking on the folder icon to the left.

Admin: 11 revisions

2011-10-26T06:18:24Z

11 revisions

← Older revision	Revision as of 08:18, 26 October 2011
(No difference)

imported>HeikoNeuweger at 19:43, 3 April 2008

2008-04-03T19:43:54Z

← Older revision		Revision as of 21:43, 3 April 2008
Line 8:		Line 8:
	* To analyze the publicly available datasets in MeltDB, please select 'Browse/Analyse an existing Experiment' from the start page.		* To analyze the publicly available datasets in MeltDB, please select 'Browse/Analyse an existing Experiment' from the start page.

	[[Image:MeltDBWiki$$HowTos$startpage.png]]		[[Image:MeltDBWiki$$HowTos$startpage.png]]

	* Select the 'Three carbon sources' experiment by clicking on the folder icon to the left.		* Select the 'Three carbon sources' experiment by clicking on the folder icon to the left.

	[[Image:MeltDBWiki$$HowTos$experiments.png]]		[[Image:MeltDBWiki$$HowTos$experiments.png]]

	* The textual display of the experiment is presented and a number of potential actions together with their short descriptions are listed below.		* The textual display of the experiment is presented and a number of potential actions together with their short descriptions are listed below.

	[[Image:MeltDBWiki$$HowTos$carbon_sources.png]]		[[Image:MeltDBWiki$$HowTos$carbon_sources.png]]

	* Please select 'Show PCA' to start the PCA analysis on the previously imported peaks found by Xcalibur preprocessing methods.		* Please select 'Show PCA' to start the PCA analysis on the previously imported peaks found by Xcalibur preprocessing methods.
	* Select all chromatograms and a list of metabolites and click the 'Compute PCA' button. If you would like to log-transform the measured and normalized metabolite values, mark the 'log' checkbox.		* Select all chromatograms and a list of metabolites and click the 'Compute PCA' button. If you would like to log-transform the measured and normalized metabolite values, mark the 'log' checkbox.

	[[Image:MeltDBWiki$$HowTos$pca.png]]		[[Image:MeltDBWiki$$HowTos$pca.png]]

imported>HeikoNeuweger at 19:43, 3 April 2008

2008-04-03T19:43:16Z

← Older revision		Revision as of 21:43, 3 April 2008
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	== Using the public MeltDB experiments ==		== Using the public MeltDB experiments ==

	Login to the public MeltDB project using the guest account:		* Login to the public MeltDB project using the guest account:
			[http://meltdb.cebitec.uni-bielefeld.de/cgi-bin/meltdb.cgi?login=guest&chksum=h/Zx4JEg6sz0I6hi97ZfsA&project=MeltDB_Public MeltDB guest login]

	* ~~[http:~~/~~/meltdb~~.~~cebitec.uni-bielefeld.de/cgi-bin/meltdb.cgi?login=guest&chksum=h/Zx4JEg6sz0I6hi97ZfsA&project=MeltDB_Public MeltDB guest login]~~		* To analyze the publicly available datasets in MeltDB, please select 'Browse/Analyse an existing Experiment' from the start page.

	~~To analyze the publicly available datasets in MeltDB, please~~		[[Image:MeltDBWiki$$HowTos$startpage.png]]
	~~select 'Browse/Analyse an existing Experiment' from the start page~~.

	~~[[Image:MeltDBWiki$$HowTos$startpage~~.~~png]]~~		* Select the 'Three carbon sources' experiment by clicking on the folder icon to the left.

	~~Select the 'Three carbon sources' experiment by clicking~~		[[Image:MeltDBWiki$$HowTos$experiments.png]]
	~~on the folder icon to the left~~.

	~~[[Image:MeltDBWiki$$HowTos$experiments~~.~~png]]~~		* The textual display of the experiment is presented and a number of potential actions together with their short descriptions are listed below.

	~~The textual display of the experiment is presented and~~		[[Image:MeltDBWiki$$HowTos$carbon_sources.png]]
	~~a number of potential actions together with their short descriptions~~
	~~are listed below~~.

	~~[[Image:MeltDBWiki$$HowTos$carbon_sources~~.~~png]]~~		* Please select 'Show PCA' to start the PCA analysis on the previously imported peaks found by Xcalibur preprocessing methods.
			* Select all chromatograms and a list of metabolites and click the 'Compute PCA' button. If you would like to log-transform the measured and normalized metabolite values, mark the 'log' checkbox.

	~~Please select 'Show PCA' to start the PCA analysis on the previously imported peaks~~		[[Image:MeltDBWiki$$HowTos$pca.png]]
	~~found by Xcalibur preprocessing methods.~~

	~~Select all chromatograms and a list of metabolites and click~~
	~~the 'Compute PCA' button. If you would like to log-transform the measured~~
	~~and normalized metabolite values, mark the 'log' checkbox.~~

	[[Image:MeltDBWiki$$HowTos$pca.png]]

imported>HeikoNeuweger at 16:20, 3 April 2008

2008-04-03T16:20:39Z

← Older revision		Revision as of 18:20, 3 April 2008
Line 5:		Line 5:
	Login to the public MeltDB project using the guest account:		Login to the public MeltDB project using the guest account:

	* [http://meltdb.cebitec.uni-bielefeld.de/cgi-bin/meltdb.cgi?login=guest&chksum=h/Zx4JEg6sz0I6hi97ZfsA&project=MeltDB_Public guest login]		* [http://meltdb.cebitec.uni-bielefeld.de/cgi-bin/meltdb.cgi?login=guest&chksum=h/Zx4JEg6sz0I6hi97ZfsA&project=MeltDB_Public MeltDB guest login]

	To analyze the publicly available datasets in MeltDB, please		To analyze the publicly available datasets in MeltDB, please

imported>HeikoNeuweger at 16:20, 3 April 2008

2008-04-03T16:20:10Z

← Older revision		Revision as of 18:20, 3 April 2008
Line 21:		Line 21:
	are listed below.		are listed below.

	[[~~Media~~:MeltDBWiki$$HowTos$carbon_sources.~~ext~~]]		[[Image:MeltDBWiki$$HowTos$carbon_sources.png]]

	Please select 'Show PCA' to start the PCA analysis on the previously imported peaks		Please select 'Show PCA' to start the PCA analysis on the previously imported peaks

imported>HeikoNeuweger at 16:18, 3 April 2008

2008-04-03T16:18:13Z

← Older revision		Revision as of 18:18, 3 April 2008
Line 10:		Line 10:
	select 'Browse/Analyse an existing Experiment' from the start page.		select 'Browse/Analyse an existing Experiment' from the start page.

	[[Image:MeltDBWiki$$HowTos$startpage.png]];		[[Image:MeltDBWiki$$HowTos$startpage.png]]

	Select the 'Three carbon sources' experiment by clicking		Select the 'Three carbon sources' experiment by clicking
	on the folder icon to the left.		on the folder icon to the left.

	[[Image:MeltDBWiki$$HowTos$experiments.png]];		[[Image:MeltDBWiki$$HowTos$experiments.png]]

	The textual display of the experiment is presented and		The textual display of the experiment is presented and
Line 21:		Line 21:
	are listed below.		are listed below.

	[[Media:MeltDBWiki$$HowTos$carbon_sources.ext]];		[[Media:MeltDBWiki$$HowTos$carbon_sources.ext]]

	Please select 'Show PCA' to start the PCA analysis on the previously imported peaks		Please select 'Show PCA' to start the PCA analysis on the previously imported peaks

imported>HeikoNeuweger at 16:17, 3 April 2008

2008-04-03T16:17:37Z

← Older revision		Revision as of 18:17, 3 April 2008
Line 30:		Line 30:
	and normalized metabolite values, mark the 'log' checkbox.		and normalized metabolite values, mark the 'log' checkbox.

	[[Image:MeltDBWiki$$HowTos$pca.png]];		[[Image:MeltDBWiki$$HowTos$pca.png]]

imported>HeikoNeuweger at 16:10, 3 April 2008

2008-04-03T16:10:56Z

← Older revision		Revision as of 18:10, 3 April 2008
Line 21:		Line 21:
	are listed below.		are listed below.

	[[~~Image~~:MeltDBWiki$$HowTos$carbon_sources.~~png~~]];		[[Media:MeltDBWiki$$HowTos$carbon_sources.ext]];

	Please select 'Show PCA' to start the PCA analysis on the previously imported peaks		Please select 'Show PCA' to start the PCA analysis on the previously imported peaks

imported>HeikoNeuweger at 16:03, 3 April 2008

2008-04-03T16:03:21Z

← Older revision		Revision as of 18:03, 3 April 2008
Line 5:		Line 5:
	Login to the public MeltDB project using the guest account:		Login to the public MeltDB project using the guest account:

	~~Guest~~ login		* [http://meltdb.cebitec.uni-bielefeld.de/cgi-bin/meltdb.cgi?login=guest&chksum=h/Zx4JEg6sz0I6hi97ZfsA&project=MeltDB_Public guest login]

	To analyze the publicly available datasets in MeltDB, please		To analyze the publicly available datasets in MeltDB, please
	select 'Browse/Analyse an existing Experiment' from the start page.		select 'Browse/Analyse an existing Experiment' from the start page.

			[[Image:MeltDBWiki$$HowTos$startpage.png]];

	Select the 'Three carbon sources' experiment by clicking		Select the 'Three carbon sources' experiment by clicking
	on the folder icon to the left.		on the folder icon to the left.

			[[Image:MeltDBWiki$$HowTos$experiments.png]];

	The textual display of the experiment is presented and		The textual display of the experiment is presented and
	a number of potential actions together with their ~~shor~~ descriptions		a number of potential actions together with their short descriptions
	are listed below		are listed below.

			[[Image:MeltDBWiki$$HowTos$carbon_sources.png]];

			Please select 'Show PCA' to start the PCA analysis on the previously imported peaks
			found by Xcalibur preprocessing methods.

			Select all chromatograms and a list of metabolites and click
			the 'Compute PCA' button. If you would like to log-transform the measured
			and normalized metabolite values, mark the 'log' checkbox.

	~~Select~~		[[Image:MeltDBWiki$$HowTos$pca.png]];