ProMeTraWiki/Color - Revision history

Alu at 09:12, 21 March 2012

2012-03-21T09:12:39Z

← Older revision		Revision as of 11:12, 21 March 2012
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	mapping that can for example be used for Transcriptomics datasets.		mapping that can for example be used for Transcriptomics datasets.

	[[~~Image~~:~~ProMeTraWiki$$Color$legend~~.png]]		[[File:Prometra_Color_legend.png]]

	* Various color gradients have been defined and are available via the web interface.		* Various color gradients have been defined and are available via the web interface.

	[[~~Image~~:~~ProMeTraWiki$$Color$colors~~.png]]		[[File:Prometra_Color_colors.png]]

	* Users can select the numerical range of the color gradient mapping. Experimental values that		* Users can select the numerical range of the color gradient mapping. Experimental values that
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	gradient range is then dynamically adapted to the submitted experimental data.		gradient range is then dynamically adapted to the submitted experimental data.

	[[~~Image~~:~~ProMeTraWiki$$Color$range~~.png]]		[[File:Prometra_Color_range.png]]

	* The 'zero-centered' option computes the maximal absolute value found in the dataset and defines a symmetric range.		* The 'zero-centered' option computes the maximal absolute value found in the dataset and defines a symmetric range.
	The value 0 is always at the center of the color gradient. If the minimal value of the experimental data is -8.9 and the maximal value is 5.6, 'zero-centered' will set the range from -8.9 to 8.9.		The value 0 is always at the center of the color gradient. If the minimal value of the experimental data is -8.9 and the maximal value is 5.6, 'zero-centered' will set the range from -8.9 to 8.9.

Alu at 15:25, 20 March 2012

2012-03-20T15:25:49Z

Admin: 4 revisions

2011-10-26T06:13:08Z

4 revisions

← Older revision	Revision as of 08:13, 26 October 2011
(No difference)

imported>HeikoNeuweger at 19:02, 19 March 2009

2009-03-19T19:02:43Z

← Older revision		Revision as of 21:02, 19 March 2009
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	[[Image:ProMeTraWiki$$Color$range.png]]		[[Image:ProMeTraWiki$$Color$range.png]]

	* The 'zero-centered' ~~options~~ computes the maximal absolute value found in the dataset and defines a symmetric range.		* The 'zero-centered' option computes the maximal absolute value found in the dataset and defines a symmetric range.
	The value 0 is always at the center of the color gradient. If the minimal value of the experimental data is -8.9 and the maximal value is 5.6, 'zero-centered' will set the range from -8.9 to 8.9.		The value 0 is always at the center of the color gradient. If the minimal value of the experimental data is -8.9 and the maximal value is 5.6, 'zero-centered' will set the range from -8.9 to 8.9.

imported>HeikoNeuweger at 19:02, 19 March 2009

2009-03-19T19:02:13Z

← Older revision		Revision as of 21:02, 19 March 2009
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	* Users can select the numerical range of the color gradient mapping. Experimental values that		* Users can select the numerical range of the color gradient mapping. Experimental values that
	are outside the range will be mapped to the colors at the respective end of the gradient.		are outside the range will be mapped to the colors at the respective end of the gradient.
	Alternatively, an automatic computation of maximal and minimal values can be employed. The color		Alternatively, an automatic computation of maximal and minimal values can be employed ('auto'). The color
	gradient range is then dynamically adapted to the submitted experimental data.		gradient range is then dynamically adapted to the submitted experimental data.

	[[Image:ProMeTraWiki$$Color$range.png]]		[[Image:ProMeTraWiki$$Color$range.png]]

			* The 'zero-centered' options computes the maximal absolute value found in the dataset and defines a symmetric range.
			The value 0 is always at the center of the color gradient. If the minimal value of the experimental data is -8.9 and the maximal value is 5.6, 'zero-centered' will set the range from -8.9 to 8.9.

imported>HeikoNeuweger at 18:57, 19 March 2009

2009-03-19T18:57:13Z

← Older revision		Revision as of 20:57, 19 March 2009
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	== Color Mappings in [[ProMeTra]] ==		== Color Mappings in [[ProMeTra]] ==

	* [[ProMeTra]] visualizes numerical values from ''Omics''-experiments by mapping them onto		* ProMeTra visualizes numerical values from ''Omics''-experiments by mapping them onto
	several color gradients (e.g. Red-to-Green). Elements in !Pathway- or GenomeMaps are		several predeined color gradients (e.g. Red-to-Green, Yellow-to-Blue, etc). Elements representing transcripts, proteins, or metabolites in !Pathway- or GenomeMaps are
	highlighted with the respective colors. The following ColorLegend ~~represents a typical~~ M-value		highlighted with the respective colors. The following ColorLegend shows an M-value
	mapping that can be ~~employed~~.		mapping that can for example be used for Transcriptomics datasets.

	[[Image:ProMeTraWiki$$Color$legend.png]]		[[Image:ProMeTraWiki$$Color$legend.png]]

imported>HeikoNeuweger at 18:51, 19 March 2009

2009-03-19T18:51:34Z

New page

__NOTOC__
== Color Mappings in [[ProMeTra]] ==

* [[ProMeTra]] visualizes numerical values from ''Omics''-experiments by mapping them onto
several color gradients (e.g. Red-to-Green). Elements in !Pathway- or GenomeMaps are
highlighted with the respective colors. The following ColorLegend represents a typical M-value
mapping that can be employed.

[[Image:ProMeTraWiki$$Color$legend.png]]

* Various color gradients have been defined and are available via the web interface.

[[Image:ProMeTraWiki$$Color$colors.png]]

* Users can select the numerical range of the color gradient mapping. Experimental values that
are outside the range will be mapped to the colors at the respective end of the gradient.
Alternatively, an automatic computation of maximal and minimal values can be employed. The color
gradient range is then dynamically adapted to the submitted experimental data.

[[Image:ProMeTraWiki$$Color$range.png]]

← Older revision		Revision as of 17:25, 20 March 2012
Line 1:		Line 1:
	__NOTOC__		__NOTOC__
	== Color Mappings in [[ProMeTra]] ==		== Color Mappings in ProMeTra ==

	* ProMeTra visualizes numerical values from ''Omics''-experiments by mapping them onto		* ProMeTra visualizes numerical values from ''Omics''-experiments by mapping them onto
	several predeined color gradients (e.g. Red-to-Green, Yellow-to-Blue, etc). Elements representing transcripts, proteins, or metabolites in !Pathway- or GenomeMaps are		several predeined color gradients (e.g. Red-to-Green, Yellow-to-Blue, etc). Elements representing transcripts, proteins, or metabolites in !Pathway- or GenomeMaps are
	highlighted with the respective colors. The following ColorLegend shows an M-value		highlighted with the respective colors. The following ColorLegend shows an M-value
	mapping that can for example be used for Transcriptomics datasets.		mapping that can for example be used for Transcriptomics datasets.

	[[Image:ProMeTraWiki$$Color$legend.png]]		[[Image:ProMeTraWiki$$Color$legend.png]]

	* Various color gradients have been defined and are available via the web interface.		* Various color gradients have been defined and are available via the web interface.

	[[Image:ProMeTraWiki$$Color$colors.png]]		[[Image:ProMeTraWiki$$Color$colors.png]]

	* Users can select the numerical range of the color gradient mapping. Experimental values that		* Users can select the numerical range of the color gradient mapping. Experimental values that
	are outside the range will be mapped to the colors at the respective end of the gradient.		are outside the range will be mapped to the colors at the respective end of the gradient.
	Alternatively, an automatic computation of maximal and minimal values can be employed ('auto'). The color		Alternatively, an automatic computation of maximal and minimal values can be employed ('auto'). The color
	gradient range is then dynamically adapted to the submitted experimental data.		gradient range is then dynamically adapted to the submitted experimental data.

	[[Image:ProMeTraWiki$$Color$range.png]]		[[Image:ProMeTraWiki$$Color$range.png]]

	* The 'zero-centered' option computes the maximal absolute value found in the dataset and defines a symmetric range.		* The 'zero-centered' option computes the maximal absolute value found in the dataset and defines a symmetric range.
	The value 0 is always at the center of the color gradient. If the minimal value of the experimental data is -8.9 and the maximal value is 5.6, 'zero-centered' will set the range from -8.9 to 8.9.		The value 0 is always at the center of the color gradient. If the minimal value of the experimental data is -8.9 and the maximal value is 5.6, 'zero-centered' will set the range from -8.9 to 8.9.