SAMSWiki/WebDocumentation/IntroDuction/ClusTering: Difference between revisions
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imported>VirginieMittard No edit summary |
imported>VirginieMittard No edit summary |
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| Line 11: | Line 11: | ||
** /HowtofindOverlaps | ** /HowtofindOverlaps | ||
* /ClusteringTools | * /ClusteringTools | ||
** /BLASTclust | ** [[/BLASTclust]] | ||
** [[/CLOBB]] | ** [[/CLOBB]] | ||
** [[/D2cluster]] | ** [[/D2cluster]] | ||
** Vmatch: see preprocessing section | ** Vmatch: see preprocessing section | ||
* '''/ClusteringandAssembly: TIGR Gene Indices Clustering (TGICL)''' | * '''/ClusteringandAssembly: TIGR Gene Indices Clustering (TGICL)''' | ||
Revision as of 08:46, 16 October 2006
The aim of the clustering is to remove redundancy, to use sequence similarity to link ESTs and a pre-partitioning of the set of ESTs for later assembly (figure). attachment: file.png
Groups will be created, ideally as much as the number of genes represented by the ESTs. Each group will contain only ESTs from one single gene (gene oriented clustering).
Here are the subsections:
- /ClusteringAlgorithms
- /AgglomerativeMethods
- /HowtofindOverlaps
- /ClusteringTools
- /BLASTclust
- /CLOBB
- /D2cluster
- Vmatch: see preprocessing section
- /ClusteringandAssembly: TIGR Gene Indices Clustering (TGICL)