Image and data upload: Difference between revisions
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This page shows all images and data files that were uploaded for the | This page shows all images and data files that were uploaded for the microarray hybridizations in your project. If you want to submit new images and data files for a scanned hybridized microarray push the "upload image and data files" button on the upper right side of the page. Fill out '''every''' field marked with a red star ( '''required fields''' ) on the opening page. You '''always''' have to upload '''two''' images (one for each channel). If you scanned the microarray with the Imagene software you have to upload '''two''' seperate data files, too. If you scanned with the [[GenePix]] software do '''not''' fill in the data file form for '''channel 2'''. Just fill out the data file form for'''channel 1''' .An error message will appear on top of the page if you submitted data in the wrong format or did not fill in all reqired fields. The fields that were filled in with the wrong data are highlighted in red. Please notice that select boxes have to be set again after submitting wrong data. | ||
== Required fields == | == Required fields == | ||
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The fields that have to be filled for the image upload are | The fields that have to be filled for the image upload are | ||
* Slide-ID, choose the | * Slide-ID, choose the microarray you scanned and you intend to upload images and data files for.(Make sure that you only choose a slide-ID that was assigned to you) | ||
* Date, the date the | * Date, the date the image and data files were uploaded | ||
* Pixel size, ( | * Pixel size, (has to be filled in, typically 10, default is "None") | ||
* Channel, the channel the microarray | * Channel, the channel the microarray was scanned with (already filled in, default is "None") | ||
* File format, the format of the image. Usually | * File format, the format of the image. Usually this will be .tiff (already filled in, default is tiff) | ||
* Location of image file, the path to the image file on your computer | * Location of image file, the path to the image file on your computer | ||
The fields that have to be filled for the data file upload are | The fields that have to be filled for the data file upload are | ||
* Used software, the software the microarray was scanned with ( | * Used software, the software the microarray was scanned with (already filled in, default is "None") | ||
* Location of the data file, the path to the data file on your computer | * Location of the data file, the path to the data file on your computer | ||
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You can also upload some additional data for the images | You can also upload some additional data for the images | ||
* Laser power [%], the power of the laser | * Laser power [%], the power of the laser used for microarray scanning | ||
* PMT [%] | * PMT [%], the photomultiplier values | ||
* Scan rate [%] | * Scan rate [%], the rate of scanning | ||
* Remarks, remarks of the scanning process for an image | * Remarks, remarks of the scanning process for an image | ||
You can also upload some additional data for the data files | You can also upload some additional data for the data files | ||
* Description, description of the data | * Description, description of the data files | ||
* Normalized, | * Normalized, whether the data file was normalized or not (already filled in, default is " -No- ") | ||
* Filtered, | * Filtered, whether the data file was filtered or not (already filled in, default is " -No- ") | ||
Revision as of 16:44, 14 May 2004
This page shows all images and data files that were uploaded for the microarray hybridizations in your project. If you want to submit new images and data files for a scanned hybridized microarray push the "upload image and data files" button on the upper right side of the page. Fill out every field marked with a red star ( required fields ) on the opening page. You always have to upload two images (one for each channel). If you scanned the microarray with the Imagene software you have to upload two seperate data files, too. If you scanned with the GenePix software do not fill in the data file form for channel 2. Just fill out the data file form forchannel 1 .An error message will appear on top of the page if you submitted data in the wrong format or did not fill in all reqired fields. The fields that were filled in with the wrong data are highlighted in red. Please notice that select boxes have to be set again after submitting wrong data.
Required fields
The fields that have to be filled for the image upload are
- Slide-ID, choose the microarray you scanned and you intend to upload images and data files for.(Make sure that you only choose a slide-ID that was assigned to you)
- Date, the date the image and data files were uploaded
- Pixel size, (has to be filled in, typically 10, default is "None")
- Channel, the channel the microarray was scanned with (already filled in, default is "None")
- File format, the format of the image. Usually this will be .tiff (already filled in, default is tiff)
- Location of image file, the path to the image file on your computer
The fields that have to be filled for the data file upload are
- Used software, the software the microarray was scanned with (already filled in, default is "None")
- Location of the data file, the path to the data file on your computer
Optional fields
You can also upload some additional data for the images
- Laser power [%], the power of the laser used for microarray scanning
- PMT [%], the photomultiplier values
- Scan rate [%], the rate of scanning
- Remarks, remarks of the scanning process for an image
You can also upload some additional data for the data files
- Description, description of the data files
- Normalized, whether the data file was normalized or not (already filled in, default is " -No- ")
- Filtered, whether the data file was filtered or not (already filled in, default is " -No- ")