SAMSWiki/WebDocumentation/IntroDuction/PreProcessing: Difference between revisions

Latest revision as of 07:17, 26 October 2011

The pre-processing part consists in several steps such as:

cutting low quality parts (usually beginning and end)
cutting or masking vector and adaptor sequences
masking repeats
masking low complexixity regions such as poly A tails
masking contaminating sequences:
- bacterial DNA
- yeast DNA
- mitochondrial DNA
- ribosomal DNA

Here are the subsections:

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