SAMSWiki/WebDocumentation/BiblioGraphy

Burke et al., 1999

   Burke, J., Davison, D., and Hide, W. (1999).
   d2_cluster: a validated method for clustering EST and full-length cDNA sequences.
   Genome Res, 9(11):1135-1142.

Claverie and States, 1993

   Claverie, J.-M. and States, D. J. (1993).
   Information enhancement methods for large scale sequence analysis.
   Computers & Chemistry, 17(2):191-201.

Ewing et al., 1998

   Ewing, B., Hillier, L., Wendl, M. C., and Green, P. (1998).
   Base-calling of automated sequencer traces using phred. I. Accuracy assessment.
   Genome Res, 8(3):175-185.

Huang and Madan, 1999

   Huang, X. and Madan, A. (1999).
   CAP3: A DNA sequence assembly program.
   Genome Res, 9(9):868-877.

Parkinson et al., 2004

   Parkinson, J., Anthony, A., Wasmuth, J., Schmid, R., Hedley, A., and Blaxter, M. (2004).
   PartiGene-constructing partial genomes.
   Bioinformatics, 20(9):1398-1404.

Parkinson et al., 2002

   Parkinson, J., Guiliano, D. B., and Blaxter, M. (2002).
   Making sense of EST sequences by CLOBBing them.
   BMC Bioinformatics, 3:31.

Stekel et al., 2000

   Stekel, D. J., Git, Y., and Falciani, F. (2000).
   The comparison of gene expression from multiple cDNA libraries.
   Genome Res, 10(12):2055-2061.

Sutton et al., 1995

   Sutton, G., White, O., Adams, M., and Kerlavage, A. (1995).
   TIGR Assembler: A new tool for assembling large shotgun sequencing projects.
   Genome Science and Technology, 1(1):9-19.

Wootton and Federhen, 1993

   Wootton, J. C. and Federhen, S. (1993).
   Statistics of local complexity in amino acid sequences and sequence databases.
   Computers & Chemistry, 17(2):149-163.

Zhang et al., 2000

   Zhang, Z., Schwartz, S., Wagner, L., and Miller, W. (2000).
   A greedy algorithm for aligning DNA sequences.
   J Comput Biol, 7(1-2):203-214.