GenDBWiki/WebDocumentation/DialogWindows/SequenceViewer: Difference between revisions
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= Sequence Viewer = | = Sequence Viewer = | ||
The Sequence Viewer (since GenDB 2.4) allows a zoomed view into the genomic sequence along with | The Sequence Viewer (available since GenDB 2.4) allows a zoomed view into the genomic sequence along with its six translated frames. | ||
You can easily | You can easily '''''select''''' some sequence, afterwards copy it with '''''Control+C''''', and finally paste it with '''''Control+V''''' into an arbitrary place. | ||
Pressing the | Pressing the Show Sequence button in the main window of GenDB, will display the [[SequenceViewer]]. Green rectangles represent the CDS. The CDS that is activated in GenDB has a stronger border and a brighter green color (directly reachable with the '''''Center''''' button). Moving the mouse over a CDS, displays its details into the Region-Information table. The Viewer allows you to scroll within a 6000nt-window. In order to get the next or previous 6000nt of the contig press the left/right button. Thus, its possible to walk easily through the whole contig. | ||
=== How to | Selecting any sequence will display the selected sequence within the '''''Sequence-Editor'''''. A '''''Reverse''''' button allows yout to reverse your selected sequence (especially usefull if you select a sequence on the back strands). | ||
The behaviour of the [[SequenceViewer]] is similar to common text-editors (e.g. notepad). You have two possibilities to | |||
=== How to select a sequence === | |||
The behaviour of the [[SequenceViewer]] is similar to common text-editors (e.g. notepad). You have two possibilities to select an arbitrary sequence: | |||
* Press the left mouse button and move it to the right or to the left (recommeneded for short sequences) | * Press the left mouse button and move it to the right or to the left (recommeneded for short sequences) | ||
* ''Left-Click'' on start position, move the scroll bar, ''Shift+Left-Click'' on end position (recommeneded for long sequences) | * ''Left-Click'' on start position, move the scroll bar, ''Shift+Left-Click'' on end position (recommeneded for long sequences) | ||
In order to obtain quickly the whole sequence of a CDS: | In order to obtain quickly the whole sequence of a CDS: | ||
* Move the mouse to the left border of | * Move the mouse to the left border of a CDS, ''Left-Click'' and pull it slightly under | ||
Revision as of 00:47, 25 March 2006
Sequence Viewer
The Sequence Viewer (available since GenDB 2.4) allows a zoomed view into the genomic sequence along with its six translated frames. You can easily select some sequence, afterwards copy it with Control+C, and finally paste it with Control+V into an arbitrary place.
Pressing the Show Sequence button in the main window of GenDB, will display the SequenceViewer. Green rectangles represent the CDS. The CDS that is activated in GenDB has a stronger border and a brighter green color (directly reachable with the Center button). Moving the mouse over a CDS, displays its details into the Region-Information table. The Viewer allows you to scroll within a 6000nt-window. In order to get the next or previous 6000nt of the contig press the left/right button. Thus, its possible to walk easily through the whole contig.
Selecting any sequence will display the selected sequence within the Sequence-Editor. A Reverse button allows yout to reverse your selected sequence (especially usefull if you select a sequence on the back strands).
How to select a sequence
The behaviour of the SequenceViewer is similar to common text-editors (e.g. notepad). You have two possibilities to select an arbitrary sequence:
- Press the left mouse button and move it to the right or to the left (recommeneded for short sequences)
- Left-Click on start position, move the scroll bar, Shift+Left-Click on end position (recommeneded for long sequences)
In order to obtain quickly the whole sequence of a CDS:
- Move the mouse to the left border of a CDS, Left-Click and pull it slightly under