ProMeTraWiki: Difference between revisions
Jump to navigation
Jump to search
m (22 revisions) |
No edit summary |
||
| (10 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
__NOTOC__ | __NOTOC__ | ||
== | == ProMeTra - Multi-Omics Viewer == | ||
ProMeTra is a web based framework for the storage and visualization of | ProMeTra is a web based framework for the storage and visualization of | ||
user defined metabolic pathway maps and their visualization with experimental data from | user defined metabolic pathway maps and their visualization with experimental data from | ||
transcriptomics, genomics and proteomics. | transcriptomics, genomics and proteomics. | ||
Please also have a look at the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/prometra_info ProMeTra website] for general information. | Please also have a look at the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/prometra_info ProMeTra website] for general information. | ||
== Important information for users of Firefox | == Important information for users of Firefox == | ||
* [[Firefox3|Read this if you experience trouble accessing the ProMeTra login page with Firefox | * [[Firefox3|Read this if you experience trouble accessing the ProMeTra login page with Firefox]]. | ||
== | == ProMeTra login page == | ||
* [http://prometra.cebitec.uni-bielefeld.de prometra.cebitec.uni-bielefeld.de] | * [http://prometra.cebitec.uni-bielefeld.de prometra.cebitec.uni-bielefeld.de] | ||
== | == ProMeTra User Manual == | ||
Download the ProMeTra user manual which details the main workflow of ProMeTra and explains how to create own pathway maps: | |||
[[Media:ProMeTra-Manual.pdf|ProMeTra manual]] | |||
== | == ProMeTra Concepts == | ||
* [[ProMeTraWiki/PrometraAccount|Using the public ProMeTra] | * [[ProMeTraWiki/PrometraAccount|Using the public ProMeTra account]] | ||
* [[ProMeTraWiki/CebitecAccount|Using your CeBiTec | * [[ProMeTraWiki/CebitecAccount|Using your CeBiTec, Bielefeld University account]] | ||
* [[ProMeTraWiki/GenomeMaps|What are the GenomeMaps | * [[ProMeTraWiki/GenomeMaps|What are the GenomeMaps available via ProMeTra?]] | ||
* [[ProMeTraWiki/Animation|What exactly is the ''Animation'' feature of ProMeTra] | * [[ProMeTraWiki/Animation|What exactly is the ''Animation'' feature of ProMeTra?]] | ||
* [[ProMeTraWiki/Color|Which methods are employed to colorize the pathway maps?]] | * [[ProMeTraWiki/Color|Which methods are employed to colorize the pathway maps?]] | ||
| Line 34: | Line 34: | ||
* [[ProMeTraWiki/Persistency|What happens to my uploaded experimental data?]] | * [[ProMeTraWiki/Persistency|What happens to my uploaded experimental data?]] | ||
* [[ProMeTraWiki/Inkscape|Which software can I use to draw my own pathway maps?]] | * [[ProMeTraWiki/Inkscape|Which software can I use to draw my own pathway maps?]] | ||
* [[ProMeTraWiki/PathwayMap|How do I create my own PathwayMap | * [[ProMeTraWiki/PathwayMap|How do I create my own PathwayMap for ProMeTra?]] | ||
* [[ProMeTraWiki/PathwayMap|What features do my SVG pathway images need to be used in ProMeTra] | * [[ProMeTraWiki/PathwayMap|What features do my SVG pathway images need to be used in ProMeTra?]] | ||
* [[ProMeTraWiki/Inkscape|Installing the Inkscape SVG Editor software]] | * [[ProMeTraWiki/Inkscape|Installing the Inkscape SVG Editor software]] | ||
* [[ProMeTraWiki/WebBrowsers|Which web browsers do support the SVG image format?]] | * [[ProMeTraWiki/WebBrowsers|Which web browsers do support the SVG image format?]] | ||
* [[ProMeTraWiki/DownloadPathway|How can I download existing pathway maps from ProMeTra] | * [[ProMeTraWiki/DownloadPathway|How can I download existing pathway maps from ProMeTra?]] | ||
* [[ProMeTraWiki/ | * [[ProMeTraWiki/UploadPathway|How can I upload my own pathway maps?]] | ||
== Data formats == | == Data formats == | ||
| Line 48: | Line 48: | ||
== Contact == | == Contact == | ||
Please send an e-mail for account requests or questions concerning the use of ProMeTra to: | Please send an e-mail for account requests or questions concerning the use of ProMeTra to the [mailto:prometra@cebitec.uni-bielefeld.de ProMeTra mailinglist] | ||
Latest revision as of 10:27, 21 March 2012
ProMeTra - Multi-Omics Viewer
ProMeTra is a web based framework for the storage and visualization of user defined metabolic pathway maps and their visualization with experimental data from transcriptomics, genomics and proteomics.
Please also have a look at the ProMeTra website for general information.
Important information for users of Firefox
ProMeTra login page
ProMeTra User Manual
Download the ProMeTra user manual which details the main workflow of ProMeTra and explains how to create own pathway maps:
ProMeTra Concepts
- Using the public ProMeTra account
- Using your CeBiTec, Bielefeld University account
- What are the GenomeMaps available via ProMeTra?
- What exactly is the Animation feature of ProMeTra?
- Which methods are employed to colorize the pathway maps?
FAQs and How Tos
- What happens to my uploaded experimental data?
- Which software can I use to draw my own pathway maps?
- How do I create my own PathwayMap for ProMeTra?
- What features do my SVG pathway images need to be used in ProMeTra?
- Installing the Inkscape SVG Editor software
- Which web browsers do support the SVG image format?
- How can I download existing pathway maps from ProMeTra?
- How can I upload my own pathway maps?
Data formats
- Which format should the experimental data in my Excel files have?
- Which other data files can I upload?
Contact
Please send an e-mail for account requests or questions concerning the use of ProMeTra to the ProMeTra mailinglist