ProMeTraWiki: Difference between revisions

Latest revision as of 10:27, 21 March 2012

ProMeTra - Multi-Omics Viewer

ProMeTra is a web based framework for the storage and visualization of user defined metabolic pathway maps and their visualization with experimental data from transcriptomics, genomics and proteomics.

Please also have a look at the ProMeTra website for general information.

Important information for users of Firefox

Read this if you experience trouble accessing the ProMeTra login page with Firefox.

ProMeTra login page

prometra.cebitec.uni-bielefeld.de

ProMeTra User Manual

Download the ProMeTra user manual which details the main workflow of ProMeTra and explains how to create own pathway maps:

ProMeTra manual

ProMeTra Concepts

FAQs and How Tos

Data formats

Contact

Please send an e-mail for account requests or questions concerning the use of ProMeTra to the ProMeTra mailinglist

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 __NOTOC__
-== [[ProMeTra]] - Multi-Omics Viewer ==
+== ProMeTra - Multi-Omics Viewer ==
 ProMeTra is a web based framework for the storage and visualization of
 user defined metabolic pathway maps and their visualization with experimental data from
 transcriptomics, genomics and proteomics.
 Please also have a look at the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/prometra_info ProMeTra website] for general information.
-== Important information for users of Firefox 3 ==
+== Important information for users of Firefox ==
-* [[Firefox3|Read this if you experience trouble accessing the ProMeTra login page with Firefox 3]].
+* [[Firefox3|Read this if you experience trouble accessing the ProMeTra login page with Firefox]].
+== ProMeTra login page ==
-== [[ProMeTra]] login page ==
 * [http://prometra.cebitec.uni-bielefeld.de prometra.cebitec.uni-bielefeld.de]
+== ProMeTra User Manual ==
+Download the ProMeTra user manual which details the main workflow of ProMeTra and explains how to create own pathway maps:
+[[Media:ProMeTra-Manual.pdf|ProMeTra manual]]
+== ProMeTra Concepts ==
+* [[ProMeTraWiki/PrometraAccount|Using the public ProMeTra account]]
+* [[ProMeTraWiki/CebitecAccount|Using your CeBiTec, Bielefeld University account]]
+* [[ProMeTraWiki/GenomeMaps|What are the GenomeMaps available via ProMeTra?]]
+* [[ProMeTraWiki/Animation|What exactly is the ''Animation'' feature of ProMeTra?]]
+* [[ProMeTraWiki/Color|Which methods are employed to colorize the pathway maps?]]
+== FAQs and How Tos ==
+* [[ProMeTraWiki/Persistency|What happens to my uploaded experimental data?]]
+* [[ProMeTraWiki/Inkscape|Which software can I use to draw my own pathway maps?]]
+* [[ProMeTraWiki/PathwayMap|How do I create my own PathwayMap for ProMeTra?]]
+* [[ProMeTraWiki/PathwayMap|What features do my SVG pathway images need to be used in ProMeTra?]]
+* [[ProMeTraWiki/Inkscape|Installing the Inkscape SVG Editor software]]
+* [[ProMeTraWiki/WebBrowsers|Which web browsers do support the SVG image format?]]
+* [[ProMeTraWiki/DownloadPathway|How can I download existing pathway maps from ProMeTra?]]
+* [[ProMeTraWiki/UploadPathway|How can I upload my own pathway maps?]]
+== Data formats ==
+* [[ProMeTraWiki/ExcelFormat|Which format should the experimental data in my Excel files have?]]
+* [[ProMeTraWiki/CSVFormat|Which other data files can I upload?]]
 == Contact ==
-Please send an e-mail for account requests or questions concerning the use of ProMeTra to:
-[[MailTo(prometra AT cebitec DOT uni DASH bielefeld DOT de)]]
-For bug reports, please use our bug reporting system [http://bugs.cebitec.uni-bielefeld.de BugZilla].
+Please send an e-mail for account requests or questions concerning the use of ProMeTra to the [mailto:prometra@cebitec.uni-bielefeld.de ProMeTra mailinglist]