SAMSWiki/WebDocumentation/IntroDuction/ClusTering: Difference between revisions
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** /HowtofindOverlaps | ** /HowtofindOverlaps | ||
* /ClusteringTools | * /ClusteringTools | ||
** /BLASTclust | ** [[/BLASTclust]] | ||
** [[/CLOBB]] | ** [[/CLOBB]] | ||
** [[/D2cluster]] | ** [[/D2cluster]] | ||
** Vmatch: see preprocessing section | ** Vmatch: see preprocessing section | ||
* '''/ClusteringandAssembly: TIGR Gene Indices Clustering (TGICL)''' | * '''/ClusteringandAssembly: TIGR Gene Indices Clustering (TGICL)''' | ||
Latest revision as of 08:16, 26 October 2011
The aim of the clustering is to remove redundancy, to use sequence similarity to link ESTs and a pre-partitioning of the set of ESTs for later assembly (figure). attachment: file.png
Groups will be created, ideally as much as the number of genes represented by the ESTs. Each group will contain only ESTs from one single gene (gene oriented clustering).
Here are the subsections:
- /ClusteringAlgorithms
- /AgglomerativeMethods
- /HowtofindOverlaps
- /ClusteringTools
- /BLASTclust
- /CLOBB
- /D2cluster
- Vmatch: see preprocessing section
- /ClusteringandAssembly: TIGR Gene Indices Clustering (TGICL)