EMMAWiki/AdministratorDocumentation/ProjectSetup: Difference between revisions

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An EMMA 2.0 Project consists of a database and a corresponding user and group management, which is supplied by the GPMS-Project Management. The database uses the MAGE-OM object description scheme. After setting up a new project as it is described in the GPMS-Documentation, this database has to be "build up", attending the following steps:
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1.) Using the O2DBI-Designer to generate the necessary Perl-modules and SQL-files:
= Project Setup =
Import the MAGE+Tools.xml file. This is the MAGE-OM object description scheme.


2.) Import the Quantitationstypes and [[QuantitationtypeDimensions]] ([[QuantitationTypes]]-COMPLETE.xml)
So far, only a setup procedure valid for the [[CeBiTec]] installation of EMMA exists. You can find this documentation at [http://www.cebitec.uni-bielefeld.de/groups/brf/internal/AdminInfoEMMA#setup Project setup (internal)]
 
3.) Import the Ontology information (Ontology-COMPLETE.xml)
 
4.) Import all necessary functions ([[AllTools]].xml)
 
5.) Add the "ALL" group, if this has not already been done during the GPMS-Setup
 
6.) Create pipelines using the EMMA 2.0 web interface (Important: Don't forget the Import-Pipeline [[ArrayLayoutImport]] consisting of the [[ArrayLayout]] import function)
 
7.) Now you are able to import arraylayouts (e.g. A-MEXP-85 from www.ebi.ac.uk) (Don't forget to assign the imported arraylayout to the group "ALL", if you wish that all users will afterwards be able to use it!)

Latest revision as of 07:16, 26 October 2011


Project Setup

So far, only a setup procedure valid for the CeBiTec installation of EMMA exists. You can find this documentation at Project setup (internal)

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