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| <!-- ## page was renamed from [[ProjectSetup]] --> | | <!-- ## page was renamed from [[ProjectSetup]] --> |
| An EMMA 2.0 Project consists of a database and a corresponding user and group management, which is supplied by the GPMS-Project Management. The database uses the MAGE-OM object description scheme. After setting up a new project as it is described in the GPMS-Documentation, this database has to be "build up", attending the following steps:
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| # If the project is created via GPMS the database will already be set up.
| | = Project Setup = |
| # In the GPMS add the use ''emma - Emma Daemon'' to your project with role ''Daemon''
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| # Import the Quantitationstypes and QuantitationtypeDimensions (QuantitationTypes-COMPLETE.xml)
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| Command:
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| <code><nowiki> test_import -p "Project" -i "[[IdentifierRefAction]]=Reference" XMLFILE </nowiki></code>
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| # Import the Ontology information (Ontology-COMPLETE.xml)
| | So far, only a setup procedure valid for the [[CeBiTec]] installation of EMMA exists. You can find this documentation at [http://www.cebitec.uni-bielefeld.de/groups/brf/internal/AdminInfoEMMA#setup Project setup (internal)] |
| Command:
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| <code><nowiki>test_import -p "Project" XMLFILE </nowiki></code>
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| # Import all necessary functions (AllTools.xml)
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| Command:
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| <code><nowiki> test_import -p "Project" -i "[[IdentifierRefAction]]=Reference" XMLFILE </nowiki></code>
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| # Add the "ALL" group, if this has not already been done during the GPMS-Setup
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| Command:
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| <code><nowiki> emma_start add_group -g ALL </nowiki></code> or use the EMMA 2.0 web interface
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| # Create pipelines using the EMMA 2.0 web interface (Important: Don't forget the Import-Pipeline ArrayLayoutImport consisting of the ArrayLayout import function)
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| # Now you are able to import arraylayouts (e.g. A-MEXP-85 from www.ebi.ac.uk) (Don't forget to assign the imported arraylayout to the group "ALL", if you wish that all users will afterwards be able to use it!)
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| The XML-files are currently only available in the CVS repository (Directory: CVSROOT/bioinfo/emma2/src/dbshema).
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Project Setup
So far, only a setup procedure valid for the CeBiTec installation of EMMA exists. You can find this documentation at Project setup (internal)