EMMAWiki/AdministratorDocumentation/ProjectSetup: Difference between revisions

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__NOTOC__
__NOTOC__
<!-- ## page was renamed from [[ProjectSetup]] -->
<!-- ## page was renamed from [[ProjectSetup]] -->
An EMMA 2.0 Project consists of a database and a corresponding user and group management, which is supplied by the GPMS-Project Management. The database uses the MAGE-OM object description scheme. After setting up a new project as it is described in the GPMS-Documentation, this database has to be "build up", attending the following steps:


# If the project is created via GPMS the database will already be set up.
= Project Setup =
# In the GPMS add the use ''emma - Emma Daemon'' to your project with role ''Daemon''
# Import the Quantitationstypes and QuantitationtypeDimensions (QuantitationTypes-COMPLETE.xml)
Command:
<code><nowiki> test_import -p "Project" -i "[[IdentifierRefAction]]=Reference" XMLFILE </nowiki></code>


# Import the Ontology information (Ontology-COMPLETE.xml)
So far, only a setup procedure valid for the [[CeBiTec]] installation of EMMA exists. You can find this documentation at [http://www.cebitec.uni-bielefeld.de/groups/brf/internal/AdminInfoEMMA#setup Project setup (internal)]
Command:
<code><nowiki>test_import -p "Project" XMLFILE </nowiki></code>
 
# Import all necessary functions (AllTools.xml)
Command:
<code><nowiki> test_import -p "Project" -i "[[IdentifierRefAction]]=Reference" XMLFILE </nowiki></code>
 
# Add the "ALL" group, if this has not already been done during the GPMS-Setup
Command:  
<code><nowiki> emma_start add_group -g ALL </nowiki></code> or use the EMMA 2.0 web interface
 
# Create pipelines using the EMMA 2.0 web interface (Important: Don't forget the Import-Pipeline ArrayLayoutImport consisting of the ArrayLayout import function)
# Now you are able to import arraylayouts (e.g. A-MEXP-85 from www.ebi.ac.uk) (Don't forget to assign the imported arraylayout to the group "ALL", if you wish that all users will afterwards be able to use it!)
 
The XML-files are currently only available in the CVS repository (Directory: CVSROOT/bioinfo/emma2/src/dbshema).

Latest revision as of 07:16, 26 October 2011


Project Setup

So far, only a setup procedure valid for the CeBiTec installation of EMMA exists. You can find this documentation at Project setup (internal)

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