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| __NOTOC__ | | __NOTOC__ |
| Here we describe how to set up a personal GenDB Webserver in the [[CeBiTec]] environment.
| | = Setting up your personal GenDB web server at [[CeBiTec]] = |
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| The following documentation relates to the Head version in the CVS | | The content of this page was moved to the [http://www.cebitec.uni-bielefeld.de/groups/brf/internal/AdminInfoGenDB/PersonalWebServer internal Wiki] since all descriptions provided here do only apply for setting up an internal GenDB web server at the CeBiTec. |
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| create a CVS direcory in your home directory e.g. 'CVS_HEAD'
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| <pre><nowiki>
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| cd
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| mkdir CVS_HEAD
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| cd CVS_HEAD
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| </nowiki></pre>
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| check out the following modules from the CVS
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| make sure your CVS_ROOT and CVS_RSH are set
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| <pre><nowiki>
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| cvs co bioinfo/common
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| cvs co bioinfo/gendb
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| cvs co bioinfo/gendb_web
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| cvs co bioinfo/projectmanagement
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| cvs co bioinfo/GOPArc
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| cvs co bioinfo/BRIDGE
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| </nowiki></pre>
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| create a user_conf.sh file in the CVS_HEAD/bioinfo/gendb_web/share/www/
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| directory. This file must contain the two following lines
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| <pre><nowiki>
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| PORT=9000
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| CVS_SUBDIR=CVS_HEAD
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| </nowiki></pre>
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| PORT defines the port where your webserver process will wait for requests (here 9000 is an example which is to be substituted by a port-number on your machine).
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| Make sure this port is not used yet. The CVS_SUBDIR states the directory relative to your home-directory where the bioinfo-subdirectory can be found.
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| In this example it is CVS_HEAD.
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| Use a remote shell on a host like bane, hook or trillian
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| <pre><nowiki>
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| rsh bane
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| </nowiki></pre>
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| change to the gendb_web directory on that host and
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| run the apache2 script with param start
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| <pre><nowiki>
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| cd ~/CVS_HEAD/bioinfo/gendb_web
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| ./apache2 start
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| </nowiki></pre>
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| this will start an httpd process on that machine that listens on the port
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| you provided in the user_conf.sh file.
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| direct your browser to
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| <pre><nowiki>
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| http://bane:9000
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| </nowiki></pre>
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| and you will see the login dialog of gendb 2.2
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| <pre><nowiki>
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| cd ~/CVS_HEAD/bioinfo/gendb_web
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| ./apache2 stop
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| </nowiki></pre>
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| will stop the webserver. Do not forget to restart the webserver if Perl
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| Modules are updated. Chnages in cgi scripts and templates will get updated automatically
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| If you made changes to cgi.template file in gendb_web/share/cgi_bin do not forget
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| to process these files with the process_templates script
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| <pre><nowiki>
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| cd ~/CVS_HEAD/bioinfo/gendb_web/bin
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| ./process_templates ../share/cgi-bin/
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| </nowiki></pre>
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| to see what errors are produced check the error logs in
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| ~/CVS_HEAD/bioinfo/gendb_web/share/logs. A convenient way to
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| analyze current errors is the use of tail -f <logfile>.
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| Make sure you start tail on the same host that the httpd process runs on,
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| otherwise delayed results are to be expected
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| <pre><nowiki>
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| rsh bane
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| cd ~/CVS_HEAD/bioinfo/gendb_web/share/logs
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| tail -f gendb2.errors
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Setting up your personal GenDB web server at CeBiTec
The content of this page was moved to the internal Wiki since all descriptions provided here do only apply for setting up an internal GenDB web server at the CeBiTec.