MeltDBWiki: Difference between revisions
Jump to navigation
Jump to search
imported>HeikoNeuweger No edit summary |
|||
| (15 intermediate revisions by 3 users not shown) | |||
| Line 8: | Line 8: | ||
Please also have a look at the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/meltdb_info MeltDB website] for general information. | Please also have a look at the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/meltdb_info MeltDB website] for general information. | ||
== MeltDB Tutorials & | == Important information for users of Firefox 3 == | ||
* [[Firefox3|Read this if you experience trouble accessing the MeltDB login page with Firefox 3]]. | |||
== NEW: MeltDB ScreenCast Tutorials == | |||
* [https://meltdb.cebitec.uni-bielefeld.de/cgi-bin/tutorials.cgi Video tutorials for the MeltDB web interface]. | |||
== MeltDB Tutorials & HowTos == | |||
* [[MeltDBWiki/UploadChromas|Upload your chromatogram data in netCDF, mzXML or mzDATA format]]. | * [[MeltDBWiki/UploadChromas|Upload your chromatogram data in netCDF, mzXML or mzDATA format]]. | ||
| Line 16: | Line 24: | ||
* [[MeltDBWiki/ImportXcalibur|Upload your preprocessed results from Xcalibur]]. | * [[MeltDBWiki/ImportXcalibur|Upload your preprocessed results from Xcalibur]]. | ||
* [[MeltDBWiki/ExperimentalFactors|Define your experimental factors according to the recommendations of the MSI]]. | * [[MeltDBWiki/ExperimentalFactors|Define your experimental factors according to the recommendations of the MSI]]. | ||
* [[MeltDBWiki/PerformFBCA|Perform chromatogram alignments using the star like feature based approach of MeltDB.]]. | |||
* [[MeltDBWiki/PeakDetection|Detect peaks in your chromatograms using MeltDB.]]. | |||
* [[MeltDBWiki/RIManual|NEW: Annotate Retention Indices manually.]]. | |||
* [[MeltDBWiki/DatabaseSearch|Search in MS databases and generate Observations for your Peaks.]]. | |||
* [[MeltDBWiki/Profiling|Perform the MeltDB profiling analysis.]]. | |||
* [[MeltDBWiki/HowTos|Run PCA analysis on sample experiment]]. | * [[MeltDBWiki/HowTos|Run PCA analysis on sample experiment]]. | ||
* [[MeltDBWiki/ConvertingCDF|Converting Thermo Finnigan RAW files to netCDF format]] | |||
== MeltDB Sample Scripts == | == MeltDB Sample Scripts == | ||
| Line 22: | Line 36: | ||
== Documentation == | == Documentation == | ||
* [http://meltdb.cebitec.uni-bielefeld.de/doc/index.html Core API] | * [http://meltdb.cebitec.uni-bielefeld.de/doc/index.html Core API] | ||
* [[MeltDBWiki/ClassDiagram|The MeltDB class hierarchy]] | |||
== MeltDB login page == | == MeltDB login page == | ||
| Line 29: | Line 44: | ||
== Misc == | == Misc == | ||
* [[MeltDBWiki/RoundingMZ|Rounding m/z values]] | * [[MeltDBWiki/RoundingMZ|Rounding m/z values]] | ||
== Contact == | == Contact == | ||
Please send an e-mail for account requests or questions concerning the use of MeltDB to: | Please send an e-mail for account requests or questions concerning the use of MeltDB to: | ||
[[ | meltdb[AT]CeBiTec[DOT]Uni-Bielefeld[DOT]de | ||
For bug reports, please use our bug reporting system [http://bugs.cebitec.uni-bielefeld.de BugZilla]. | For bug reports, please use our bug reporting system [http://bugs.cebitec.uni-bielefeld.de BugZilla]. | ||
Latest revision as of 16:28, 31 October 2011
MeltDB - Metabolomics Software Platform
MeltDB is a web based framework for the storage, analysis and visualization of metabolomic datasests and their integration with experimental data from transcriptomics, genomics and proteomics.
Please also have a look at the MeltDB website for general information.
Important information for users of Firefox 3
NEW: MeltDB ScreenCast Tutorials
MeltDB Tutorials & HowTos
- Upload your chromatogram data in netCDF, mzXML or mzDATA format.
- Organize your chromatograms in replicate groups.
- Combine your chromatogram groups to experiments.
- Review your raw datasets and evaluate the quality of the chromatograms.
- Upload your preprocessed results from Xcalibur.
- Define your experimental factors according to the recommendations of the MSI.
- Perform chromatogram alignments using the star like feature based approach of MeltDB..
- Detect peaks in your chromatograms using MeltDB..
- NEW: Annotate Retention Indices manually..
- Search in MS databases and generate Observations for your Peaks..
- Perform the MeltDB profiling analysis..
- Run PCA analysis on sample experiment.
- Converting Thermo Finnigan RAW files to netCDF format
MeltDB Sample Scripts
Documentation
MeltDB login page
Misc
Contact
Please send an e-mail for account requests or questions concerning the use of MeltDB to: meltdb[AT]CeBiTec[DOT]Uni-Bielefeld[DOT]de
For bug reports, please use our bug reporting system BugZilla.