Latest revision as of 07:17, 26 October 2011

BRF Software Documentation

File:FrontPage$BRIDGE-2007 small.png

The following Wiki pages contain the documentation of the bioinformatics tools developed and provided by the team of the Bioinformatics Resource Facility (BRF) of the Center for Biotechnology (CeBiTec) at Bielefeld University.

GenDBWiki (how to use the GenDB genome annotation system)
SAMSWiki (how to use the SAMS Sequence Analysis and Management System)
EMMAWiki (how to use the EMMA microarray analysis tool)
ArrayLIMSWiki (how to store microarray experimental data in the Laboratory Information Management System)
ProDBWiki (how to use the ProDB proteomics analysis tool)
MGE-PortalWiki (how to use the MGE-Portal bioinformatics portal)
BACDIVERS-PortalWiki (how to use the BACDIVERS-Portal bioinformatics portal)
MeltDBWiki (how to use the MeltDB metabolomic framework)
OntologyDBWiki (how to use the OntologyDB framework)
IGetDBWiki (how to use the IGetDB data warehouse)

/!\ See important information for Firefox 3 users /!\

All projects are managed via the General Project Management System. The following link contains the GPMS documentation:

GPMSWiki

The current installation and update mechanism is called General Installation System (GIS). The following link contains the GIS documentation:

InstallationSystemWiki

@@ Line 3: / Line 3: @@
 <!-- #pragma section-numbers off -->
-= Cebitec Wiki =
+= BRF Software Documentation =
-* [[HelpForBeginners]] will give you a introduction what a [[WikiWiki]] is.
+[[Image:FrontPage$BRIDGE-2007_small.png]]
-* GenDBWiki
-* ProDBWiki
-= [[MoinMoin]] Wiki =
+The following Wiki pages contain the documentation of the bioinformatics tools developed and provided by the team of the Bioinformatics Resource Facility ([http://www.cebitec.uni-bielefeld.de/groups/brf/ BRF]) of the Center for Biotechnology ([http://www.cebitec.uni-bielefeld.de/ CeBiTec]) at Bielefeld University.
-A [[WikiWikiWeb]] is a collaborative hypertext environment, with an emphasis on easy access to and modification of information. This wiki can also link to [[InterWiki]] space.
+* [[GenDBWiki]] (how to use the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/gendb_info/ GenDB] genome annotation system)
+* [[SAMSWiki]] (how to use the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/sams_info/ SAMS] Sequence Analysis and Management System)
+* [[EMMAWiki]] (how to use the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/emma_info/ EMMA] microarray analysis tool)
+* [[ArrayLIMSWiki]] (how to store microarray experimental data in the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/arraylims/ Laboratory Information Management System])
+* [[ProDBWiki]] (how to use the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/prodb_info/ ProDB] proteomics analysis tool)
+* [[MGE-PortalWiki]] (how to use the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/mge-portal/ MGE-Portal] bioinformatics portal)
+* [[BACDIVERS-PortalWiki]] (how to use the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/bacd-portal/ BACDIVERS-Portal] bioinformatics portal)
+* [[MeltDBWiki]] (how to use the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/MeltDB_info/ MeltDB] metabolomic framework)
+* [[OntologyDBWiki]] (how to use the OntologyDB framework)
+* [[IGetDBWiki]] (how to use the IGetDB data warehouse)
-[[MoinMoin]] is a Python Wiki:[[WikiClone]], based on Wiki:[[PikiPiki]]. The name is a common German slang expression explained on the [[MoinMoin]] page. If you run a Wiki using [[MoinMoin]], please add it to the [[MoinMoin]]:[[MoinMoinWikis]] page. Contributed code is on the [[MoinMoin]]:[[MacroMarket]], [[MoinMoin]]:[[ActionMarket]] and [[MoinMoin]]:[[ParserMarket]] pages. For more details and further topics, see the [[MoinMoin]] page.
+/!\ '''See important information for [[Firefox3|Firefox 3 users]]''' /!\
 ----
-You can edit any page by pressing the link at the bottom of the page.  Capitalized words joined together form a [[WikiName]], which hyperlinks to another page.  The highlighted title searches for all pages that link to the current page.  Pages which do not yet exist are linked with a question mark: just follow the link and you can add a definition.
-To get an overview over this site and what it contains, see the [[Special:Specialpages|SiteNavigation]] page.
+All projects are managed via the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/gpms/ General Project Management System]. The following link contains the GPMS documentation:
-To learn more about what a [[WikiWikiWeb]] is, read about [[MoinMoin]]:[[WhyWikiWorks]] and the [[MoinMoin]]:[[WikiNature]]. Also, consult the [[MoinMoin]]:[[WikiWikiWebFaq]].
+* [[GPMSWiki]]
 ----
-Interesting starting points:
-* [[Special:Recentchanges|RecentChanges]]: see where people are currently working
+The current installation and update mechanism is called  General Installation System (GIS). The following link contains the GIS documentation:
-* [[HelpForBeginners]]: to get you going
-* [[WikiSandBox]]: feel free to change this page and experiment with editing
+* [[InstallationSystemWiki]]
-* [[Special:Search|FindPage]]: search or browse the database in various ways
-* [http://meta.wikimedia.org/wiki/Help:Editing SyntaxReference]

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Latest revision as of 07:17, 26 October 2011

BRF Software Documentation

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