EMMAWiki/DeveloperDocumentation: Difference between revisions
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__NOTOC__ | __NOTOC__ | ||
= Documentation for Developers = | = Documentation for Developers = | ||
* [[/GettingStarted|Getting Started]] | * [[EMMAWiki/DeveloperDocumentation/GettingStarted|Getting Started]] | ||
* [[/APIDocumentation|API Documentation]] | * [[EMMAWiki/DeveloperDocumentation/APIDocumentation|API Documentation]] | ||
* [[/BuildingHeatmapViewer|Building the Heatmap Viewer]] | * [[EMMAWiki/DeveloperDocumentation/BuildingHeatmapViewer|Building the Heatmap Viewer]] | ||
* [[/DevelopingPlugIns|Developing Plugins]] | * [[EMMAWiki/DeveloperDocumentation/DevelopingPlugIns|Developing Plugins]] | ||
* [[UsingTheWSInterface|Using the WS Interface]] | * [[UsingTheWSInterface|Using the WS Interface]] | ||
* [[/MagemlExporterGenerator|MAGE-ML Exporter Generator]] | * [[EMMAWiki/DeveloperDocumentation/MagemlExporterGenerator|MAGE-ML Exporter Generator]] | ||
== Other modules == | == Other modules == | ||
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those packages: | those packages: | ||
* '''GPMS''' (aka. projectmanagement) is required by almost all | * '''GPMS''' (aka. projectmanagement) is required by almost all CeBiTec software. It is used for user, password and project management, rights and roles. See the Self:GPMSWiki if you need more information about project creation, Applicationframes, Members, Rights, and Roles. | ||
* '''ArrayLIMS''' is required for storing raw data. In EMMA it is used within Importer modules. See Self:ArrayLIMSWiki | * '''ArrayLIMS''' is required for storing raw data. In EMMA it is used within Importer modules. See Self:ArrayLIMSWiki | ||
* '''O2DBI''' is the object-relational mapping system use to implement the database backend. If you need to know about code generation or even want to modify EMMA's database model consult Self:O2DBIWiki | * '''O2DBI''' is the object-relational mapping system use to implement the database backend. If you need to know about code generation or even want to modify EMMA's database model consult Self:O2DBIWiki | ||
* '''GOParc''' is used to manage KEGG pathways and plot espression data into pathway images. There is no Self:GOParcWiki yet, but the modules in <code><nowiki>cvs/GOParc/share/perl</nowiki></code> contain a basic amount of inline POD documentation. | * '''GOParc''' is used to manage KEGG pathways and plot espression data into pathway images. There is no Self:GOParcWiki yet, but the modules in <code><nowiki>cvs/GOParc/share/perl</nowiki></code> contain a basic amount of inline POD documentation. | ||
* '''OntoDB''' is used to manage ontology entries from the MGED ontology. There is | * '''OntoDB''' is used to manage ontology entries from the MGED ontology. There is the Self:OntologyDBWiki, in addition the modules in <code><nowiki>cvs/ontodb/share/perl</nowiki></code> contain a basic amount of inline POD documentation. | ||
Latest revision as of 14:05, 26 October 2011
Documentation for Developers
- Getting Started
- API Documentation
- Building the Heatmap Viewer
- Developing Plugins
- Using the WS Interface
- MAGE-ML Exporter Generator
Other modules
EMMA uses other software packages, so you might need to consult documentation specific to those packages:
- GPMS (aka. projectmanagement) is required by almost all CeBiTec software. It is used for user, password and project management, rights and roles. See the Self:GPMSWiki if you need more information about project creation, Applicationframes, Members, Rights, and Roles.
- ArrayLIMS is required for storing raw data. In EMMA it is used within Importer modules. See Self:ArrayLIMSWiki
- O2DBI is the object-relational mapping system use to implement the database backend. If you need to know about code generation or even want to modify EMMA's database model consult Self:O2DBIWiki
- GOParc is used to manage KEGG pathways and plot espression data into pathway images. There is no Self:GOParcWiki yet, but the modules in
cvs/GOParc/share/perlcontain a basic amount of inline POD documentation. - OntoDB is used to manage ontology entries from the MGED ontology. There is the Self:OntologyDBWiki, in addition the modules in
cvs/ontodb/share/perlcontain a basic amount of inline POD documentation.