Revision as of 17:43, 6 March 2006

Cluster-Tool

The Cluster-Tool can be used to search for conserved gene-clusters. To use the tool you must do the following:

create a Blast vs. Seed - Tool using the create_Blast_vs_SEED_Cluster_Tool.pl - script.
run the tool
have a look at the observations - there is a link in the DB-column, where you can start the Cluster-Tool
depending on the number of clusters found, the tool may need some time until the results are computed

This is the first part of the Cluster-Tool-Result. You get some statistics how many clusters were found and how big they are. Then you get two tables where subsystems and roles are listed for the CDS that are similar to your input-CDS. For more information about subsystems and roles see: SEED.

File:GenDBWiki$$WebDocumentation$$DialogWindows$$ClusterTool$ClusterTool summary.gif File:GenDBWiki$$WebDocumentation$$DialogWindows$$ClusterTool$ClusterTool clusters.gif

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 # depending on the number of clusters found, the tool may need some time until the results are computed
 <br><br>
-This is the first part of the Cluster-Tool-Result. You get some statistics how many clusters were found and how big they are. Then you get two tables where subsystems and roles are listed for the CDS that are similar to your input-CDS. For more information about subsystems and roles see: [http://theseed.uchicago.edu/FIG/index.cgi SEED]
+This is the first part of the Cluster-Tool-Result. You get some statistics how many clusters were found and how big they are. Then you get two tables where subsystems and roles are listed for the CDS that are similar to your input-CDS. For more information about subsystems and roles see: [http://theseed.uchicago.edu/FIG/index.cgi SEED].<br>
+<br>
 [[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$ClusterTool$ClusterTool_summary.gif]]
 [[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$ClusterTool$ClusterTool_clusters.gif]]
 [[Media:GenDBWiki$$WebDocumentation$$DialogWindows$$ClusterTool$ClusterTool_Bachelorarbeit.pdf]]