OntologyDBWiki/DeveloperDocumentation/ProjectsSpecification

Specification Ontology Database

GPMS Information

project name

• ONTODB

project class

• ONTODB

project description

MetaXP is a search facility for expression data. It enables the user to quickly access experiments and their results by formulating queries such as "Give me all temperature-related stress experiments containing gene XY" or "Give me a list of all up-regulated genes in experiments on Xanthomonas campestris". MetaXP combines data from EMMA, GenDB and ProDB. The data is imported from each of these databases and processed for searchability. <http://intranet/bioinfo/MetaXP>

database name

ontodb_test

database description

Contains only test data. Do not try to use it for real research.

database DataSource_Type

MySQL 4.x

New Members

• Kai Runte (Chief)

Roles and Rights

Role	Description	Rights
User	Denotes the average user. They can query the ontology database, but nothing else.	basic_access
Maintainer	This person can import and export an ontology, but cannot create new ones.	basic_access, export, import, edit
Developer	A developer has all the rights of a maintainer. Additionally (s)he should be able to alter a database structure.	basic_access, export, import, edit, modify_db
Chief	A chief is responsible for adding/removing users to a project/ontology.	basic_access, export, import, edit, add_user
Admin	An admin has basically all rights	basic_access, export, import, edit, add_user, modify_db