EMMAWiki/DeveloperDocumentation

Documentation for Developers

• Getting Started
• API Documentation
• Building the Heatmap Viewer
• Developing Plugins
• Using the WS Interface
• MAGE-ML Exporter Generator

Other modules

EMMA uses other software packages, so you might need to consult documentation specific to those packages:

• GPMS (aka. projectmanagement) is required by almost all CeBiTec software. It is used for user, password and project management, rights and roles. See the Self:GPMSWiki if you need more information about project creation, Applicationframes, Members, Rights, and Roles.
• ArrayLIMS is required for storing raw data. In EMMA it is used within Importer modules. See Self:ArrayLIMSWiki
• O2DBI is the object-relational mapping system use to implement the database backend. If you need to know about code generation or even want to modify EMMA's database model consult Self:O2DBIWiki
• GOParc is used to manage KEGG pathways and plot espression data into pathway images. There is no Self:GOParcWiki yet, but the modules in cvs/GOParc/share/perl contain a basic amount of inline POD documentation.
• OntoDB is used to manage ontology entries from the MGED ontology. There is the Self:OntologyDBWiki, in addition the modules in cvs/ontodb/share/perl contain a basic amount of inline POD documentation.