GenDBWiki/WebDocumentation/DialogWindows/OrthologViewer: Difference between revisions
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== Contig View == | == Contig View == | ||
[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$OrthologViewer$ | [[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$OrthologViewer$ortholog_viewer_1.gif]] | ||
On the right side of the image you can do the following: | On the right side of the image you can do the following: | ||
Revision as of 11:48, 5 December 2006
Ortholog Viewer
The Ortholog Viewer is a tool that shows ortholog CDS in similar genomes. The orthologs have to be computed before.
What should be done to use this tool?
- create Bidirectional-Blast-Tools in the project with: create_genome_compare_tools.pl
- Run the Tool for each Contig-combination with: submit_job.pl
- Run set_biderectional_project_config.pl.
- Run compute_orthologs.pl to create ortholog-observations
- Use the tool
Contig View
File:GenDBWiki$$WebDocumentation$$DialogWindows$$OrthologViewer$ortholog viewer 1.gif
On the right side of the image you can do the following:
Annotate the reference
You can select one CDS as reference and annotate it (or check if the annotation is correct), using the Annotation Dialog.
- select the desired CDS as Reference
- click the "Annotate Reference" - button
- do your annotation
File:GenDBWiki$$WebDocumentation$$DialogWindows$$OrthologViewer$compAnno annotateReference.gif
Copy Annotation
You can copy the annotation from one CDS to others.