GenDBWiki/WebDocumentation/DialogWindows/OrthologViewer: Difference between revisions
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The Ortholog Viewer is a tool that shows ortholog CDS in similar genomes. The orthologs have to be computed before.<br> | The Ortholog Viewer is a tool that shows ortholog CDS in similar genomes. The orthologs have to be computed before.<br> | ||
<br> | <br> | ||
What should be done to use this tool?<br> | What should be done to use this tool? (Points 1-3 are already done, if you prepared the project for the [[GenDBWiki/WebDocumentation/DialogWindows/ComparativeAnnotator|Comparative Annotator]]<br> | ||
# create Bidirectional-Blast-Tools in the project with: ''create_genome_compare_tools.pl''<br> | # create Bidirectional-Blast-Tools in the project with: ''create_genome_compare_tools.pl''<br> | ||
# Run the Tool for each Contig-combination with: ''submit_job.pl''<br> | # Run the Tool for each Contig-combination with: ''submit_job.pl''<br> | ||
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# Use the tool<br> | # Use the tool<br> | ||
<br> | <br> | ||
This is how the window looks like after opening the Ortholog Viewer:<br> | |||
[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$OrthologViewer$ortholog_viewer_1.gif]] | [[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$OrthologViewer$ortholog_viewer_1.gif]] | ||
Now you can do the following: | |||
* [[# | * [[#BrowseOrthologs|Browse through the genome]] | ||
* [[#SelectCDS|Select a CDS]] | |||
* [[# | |||
[[Anchor(Browse Orthologs)]] | |||
==== | ==== Browse through the genome ==== | ||
<span id="SelectCDS"></span> | |||
==== Select a CDS ==== | |||
Revision as of 11:56, 5 December 2006
Ortholog Viewer
The Ortholog Viewer is a tool that shows ortholog CDS in similar genomes. The orthologs have to be computed before.
What should be done to use this tool? (Points 1-3 are already done, if you prepared the project for the Comparative Annotator
- create Bidirectional-Blast-Tools in the project with: create_genome_compare_tools.pl
- Run the Tool for each Contig-combination with: submit_job.pl
- Run set_biderectional_project_config.pl.
- Run compute_orthologs.pl to create ortholog-observations
- Use the tool
This is how the window looks like after opening the Ortholog Viewer:
File:GenDBWiki$$WebDocumentation$$DialogWindows$$OrthologViewer$ortholog viewer 1.gif
Now you can do the following:
Browse through the genome