MGE-PortalWiki: Difference between revisions
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This is the primary source of documentation for the the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/mge-portal/ MGE-Portal]. | This is the primary source of documentation for the the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/mge-portal/ MGE-Portal]. | ||
The portal implements the activities of the [http://www.cebitec.uni-bielefeld.de/groups/brf/cooperations/marine_genomics_bioinformatics.html Bioinformatics Platform]. | The portal implements the activities of the [http://www.cebitec.uni-bielefeld.de/groups/brf/cooperations/marine_genomics_bioinformatics.html Bioinformatics Platform]. | ||
[[Image:MGE-PortalWiki$see_stern_small.png]] | |||
The Portal contain data sets and tools for the analysis of ESTs, Microarrays, Genomes etc. | The Portal contain data sets and tools for the analysis of ESTs, Microarrays, Genomes etc. | ||
The portal is run by the "Bioinformatics Resource Facility ([http://www.cebitec.uni-bielefeld.de/groups/brf/ BRF])". | The portal is run by the "Bioinformatics Resource Facility ([http://www.cebitec.uni-bielefeld.de/groups/brf/ BRF])". | ||
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* [http://www.cebitec.uni-bielefeld.de/groups/brf/software/emma_info/ EMMA] Microarray data storage and analysis. | * [http://www.cebitec.uni-bielefeld.de/groups/brf/software/emma_info/ EMMA] Microarray data storage and analysis. | ||
* [http://fig.cebitec.uni-bielefeld.de/FIG/ SEED] Comparative genomics environment. | * [http://fig.cebitec.uni-bielefeld.de/FIG/ SEED] Comparative genomics environment. | ||
== Login to the Portal == | |||
The portal requires a user name and password from every user. The assumption is made that every individual has his/her own private login. If two individuals share one login and use it simultaneously, terrible things will happen to the user settings and data. | |||
You can request additional logins either from the project leaders or via an email to | |||
[mailto:mg-bielefeld@cebitec.uni-bielefeld.de mailto:mg-bielefeld@cebitec.uni-bielefeld.de]. | |||
== Data access permissions == | == Data access permissions == | ||
Revision as of 21:48, 14 January 2005
MGE-PortalWiki Overview Page
This is the primary source of documentation for the the MGE-Portal. The portal implements the activities of the Bioinformatics Platform.
File:MGE-PortalWiki$see stern small.png
The Portal contain data sets and tools for the analysis of ESTs, Microarrays, Genomes etc. The portal is run by the "Bioinformatics Resource Facility (BRF)".
We maintain a list of ./FrequentlyAskedQuestions.
The individual software packages contained in the platform have their own documentation
- GenDB Sequence analysis for larger contigs (GENDB) and ESTs (GenDB!/SAMS).
- EMMA Microarray data storage and analysis.
- SEED Comparative genomics environment.
Login to the Portal
The portal requires a user name and password from every user. The assumption is made that every individual has his/her own private login. If two individuals share one login and use it simultaneously, terrible things will happen to the user settings and data.
You can request additional logins either from the project leaders or via an email to mailto:mg-bielefeld@cebitec.uni-bielefeld.de.
Data access permissions
Some data sets are freely available to all members of MGE. Other data sets remain private to a project within MGE. Access is the controlled by the head of this project via a web interface. All MGE members can request access to these data sets directly from this project leader via the portal.
The General Project Management System (GPMS) provides an interface for requesting and granting access.
Informations about Tools
- ./BLAST
- ./EMBOSS