EMMAWiki: Difference between revisions
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== EMMA 2 - A MAGE-compliant system for storage and analysis of microarray data == | == EMMA 2 - A MAGE-compliant system for storage and analysis of microarray data == | ||
EMMA 2 is a web-based system for management and analysis of transcriptomic data. EMMA 2 allows mapping of gene expression data onto proteome data or pathways and vice versa | EMMA 2 is a web-based system for management and analysis of transcriptomic data. EMMA 2 allows mapping of gene expression data onto proteome data or pathways and vice versa. It provides extensible analysis and visualization Plug-Ins via the R-language. EMMA 2 now supports the MAGE-ML XML-language for the interchange of microarray data. | ||
With EMMA you can do normalization of single and multiple microarrays and | With EMMA you can do normalization of single and multiple microarrays and run statistical tests for inferring differrentially expressed genes. You can also run cluster analysis to find co-regulated genes. | ||
Please have a look at the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/emma_info/ EMMA website] for general information. | Please have a look at the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/emma_info/ EMMA website] for general information. | ||
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== Documentation == | == Documentation == | ||
* /CoreDocumentation (Documentation of the main backend functionality and executable scripts) | * /CoreDocumentation (Documentation of the main backend functionality and executable scripts) | ||
* /UserManual ( | * /UserManual (Documentation on the use of the web-interface) | ||
** /WebDocumentation | ** /WebDocumentation | ||
* /DeveloperDocumentation | * /DeveloperDocumentation | ||
Revision as of 12:49, 18 April 2005
EMMA 2 Overview Page
EMMA 2 - A MAGE-compliant system for storage and analysis of microarray data
EMMA 2 is a web-based system for management and analysis of transcriptomic data. EMMA 2 allows mapping of gene expression data onto proteome data or pathways and vice versa. It provides extensible analysis and visualization Plug-Ins via the R-language. EMMA 2 now supports the MAGE-ML XML-language for the interchange of microarray data. With EMMA you can do normalization of single and multiple microarrays and run statistical tests for inferring differrentially expressed genes. You can also run cluster analysis to find co-regulated genes.
Please have a look at the EMMA website for general information.
- /TermsAndConcepts
- /ForUsers
- /ForDevelopers
Documentation
- /CoreDocumentation (Documentation of the main backend functionality and executable scripts)
- /UserManual (Documentation on the use of the web-interface)
- /WebDocumentation
- /DeveloperDocumentation
- /AdministratorDocumentation (Installation, project configuration and account management)
- /FAQs
- /HowTos
General
- /FeatureTable
- /FuturePlans
Other Issues
For more information about project setup, license, application examples, and publications, please go to the EMMA website.
- /SoftwareDisclaimer
Contact
Please send
- help requests to MailTo(emma AT cebitec DOT uni DASH bielefeld DOT de)
- bug-reports and feature requests to MailTo(emma DASH devel AT cebitec DOT uni DASH bielefeld DOT de) or use BugZilla
- account requests to MailTo(emma DASH support AT cebitec DOT uni DASH bielefeld DOT de)
/!\ Please never send passwords or other confidential information to mailing lists
Developers
- Michel Dondrup
- Alexander Goesman
- Stefan Albaum
- Thasso Griebel
- Tim Kahlke
- Felix Tille
[1] Cartoon by Daniel Koch, 2004
![[1]](http://www-test.cebitec.uni-bielefeld.de/~mdondrup/INTERN/EMMA2/emma_cartoon_by_dkoch.png){kind=link}
Copyright (C) 2004, Center for Biotechnology, Bielefeld University
Author: Michael Dondrup