EMMAWiki: Difference between revisions
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Please have a look at the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/emma_info/ EMMA website] for general information. | Please have a look at the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/emma_info/ EMMA website] for general information. | ||
* /TermsAndConcepts | * [[/TermsAndConcepts|Terms and Concepts]] | ||
** [[/TermsAndConcepts/ForUsers| For Users]] | ** [[/TermsAndConcepts/ForUsers| For Users]] | ||
** [[/TermsAndConcepts/ForDevelopers| For Developers]] | ** [[/TermsAndConcepts/ForDevelopers| For Developers]] | ||
== Documentation == | == Documentation == | ||
* /CoreDocumentation (Documentation of the main backend functionality and executable scripts) | * [[/CoreDocumentation|Core Documentation(Documentation of the main backend functionality and executable scripts)]] | ||
* /UserManual | * [[/UserManual|User Manual(Documentation on the use of the web-interface)]] | ||
** /WebDocumentation | ** [[/WebDocumentation|Web Documentation]] | ||
** [[Media:EMMAWiki$EMMA_Quickstart.pdf|QuickStart Documentation (PDF)]] | ** [[Media:EMMAWiki$EMMA_Quickstart.pdf|QuickStart Documentation (PDF)]] | ||
* /DeveloperDocumentation | * [[/DeveloperDocumentation|Developer Documentation]] | ||
** [[/DeveloperDocumentation/GettingStarted| GettingStarted]] | ** [[/DeveloperDocumentation/GettingStarted| GettingStarted]] | ||
* /AdministratorDocumentation (Installation, project configuration and account management) | * [[/AdministratorDocumentation|Administrator Documentation(Installation, project configuration and account management)]] | ||
** [[/AdministratorDocumentation/SoftwareRequirements| SoftwareRequirements]] | ** [[/AdministratorDocumentation/SoftwareRequirements| SoftwareRequirements]] | ||
** [[/AdministratorDocumentation/HardwareRequirements| HardwareRequirements]] | ** [[/AdministratorDocumentation/HardwareRequirements| HardwareRequirements]] | ||
** [[/AdministratorDocumentation/InstallationInstructions| InstallationInstructions]] | ** [[/AdministratorDocumentation/InstallationInstructions| InstallationInstructions]] | ||
** [[ | ** [[ProjectSetup| ProjectSetup]] | ||
* /FAQs | * [[/FAQs|FAQs]] | ||
* /HowTos | * [[/HowTos|HowTos]] | ||
== General == | == General == | ||
* /FeatureTable | * [[/FeatureTable|Feature Table]] | ||
* /FuturePlans | * [[/FuturePlans|Future Plans]] | ||
== Other Issues == | == Other Issues == | ||
| Line 36: | Line 36: | ||
For more information about project setup, license, application examples, and publications, please go to the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/emma_info EMMA website]. | For more information about project setup, license, application examples, and publications, please go to the [http://www.cebitec.uni-bielefeld.de/groups/brf/software/emma_info EMMA website]. | ||
* /SoftwareDisclaimer | * [[/SoftwareDisclaimer|Software Disclaimer]] | ||
== Contact == | == Contact == | ||
| Line 51: | Line 51: | ||
* [http://www.cebitec.uni-bielefeld.de/~mdondrup Michel Dondrup] | * [http://www.cebitec.uni-bielefeld.de/~mdondrup Michel Dondrup] | ||
* [http://www.cebitec.uni-bielefeld.de/~agoesman Alexander Goesman] | * [http://www.cebitec.uni-bielefeld.de/~agoesman Alexander Goesman] | ||
* Stefan Albaum | * [http://www.cebitec.uni-bielefeld.de/~alu Stefan Albaum] | ||
* Thasso Griebel | * [http://www.cebitec.uni-bielefeld.de/~jgriebel Thasso Griebel] | ||
* Tim Kahlke | * [http://www.cebitec.uni-bielefeld.de/~druffi Tim Kahlke] | ||
* Felix Tille | * [http://www.cebitec.uni-bielefeld.de/~ftille Felix Tille] | ||
----------- | ----------- | ||
Revision as of 14:52, 18 April 2005
EMMA 2 Overview Page
EMMA 2 - A MAGE-compliant system for storage and analysis of microarray data
EMMA 2 is a web-based system for management and analysis of transcriptomic data. EMMA 2 allows mapping of gene expression data onto proteome data or pathways and vice versa. It provides extensible analysis and visualization Plug-Ins via the R-language. EMMA 2 now supports the MAGE-ML XML-language for the interchange of microarray data. With EMMA you can do normalization of single and multiple microarrays and run statistical tests for inferring differrentially expressed genes. You can also run cluster analysis to find co-regulated genes.
Please have a look at the EMMA website for general information.
Documentation
- Core Documentation(Documentation of the main backend functionality and executable scripts)
- User Manual(Documentation on the use of the web-interface)
- Developer Documentation
- Administrator Documentation(Installation, project configuration and account management)
- FAQs
- HowTos
General
Other Issues
For more information about project setup, license, application examples, and publications, please go to the EMMA website.
Contact
Please send
- help requests to MailTo(emma AT cebitec DOT uni DASH bielefeld DOT de)
- bug-reports and feature requests to MailTo(emma DASH devel AT cebitec DOT uni DASH bielefeld DOT de) or use BugZilla
- account requests to MailTo(emma DASH support AT cebitec DOT uni DASH bielefeld DOT de)
/!\ Please never send passwords or other confidential information to mailing lists
Developers
File:EMMAWiki$emma cartoon by dkoch.png Cartoon by Daniel Koch, 2004
Copyright (C) 2004, Center for Biotechnology, Bielefeld University
Author: Michael Dondrup