GenDBWiki/WebDocumentation/DialogWindows/OrthologViewer: Difference between revisions
imported>NilsKleinboelting No edit summary |
imported>NilsKleinboelting No edit summary |
||
| Line 22: | Line 22: | ||
[[Anchor(Browse Orthologs)]] | [[Anchor(Browse Orthologs)]] | ||
==== Browse through the genome ==== | ==== Browse through the genome ==== | ||
You can browse through the genome, using the scrollbar. When moving the mouse over a CDS-box, its orthologs are highlighted yellow:<br> | |||
[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$OrthologViewer$ortholog_viewer_2.gif]] | |||
When you find an interesting CDS you may examine it further by selecting it.<br> | |||
<span id="SelectCDS"></span> | <span id="SelectCDS"></span> | ||
==== Select a CDS ==== | ==== Select a CDS ==== | ||
By clicking a CDS-box, one CDS is selected (red) and its orthologs are shown orange. | |||
[[Image:GenDBWiki$$WebDocumentation$$DialogWindows$$OrthologViewer$ortholog_viewer_3.gif]] | |||
Revision as of 12:17, 5 December 2006
Ortholog Viewer
The Ortholog Viewer is a tool that shows ortholog CDS in similar genomes. The orthologs have to be computed before.
What should be done to use this tool? (Points 1-3 are already done, if you prepared the project for the Comparative Annotator
- create Bidirectional-Blast-Tools in the project with: create_genome_compare_tools.pl
- Run the Tool for each Contig-combination with: submit_job.pl
- Run set_biderectional_project_config.pl.
- Run compute_orthologs.pl to create ortholog-observations
- Use the tool
This is how the window looks like after opening the Ortholog Viewer:
File:GenDBWiki$$WebDocumentation$$DialogWindows$$OrthologViewer$ortholog viewer 1.gif
Now you can do the following:
Browse through the genome
You can browse through the genome, using the scrollbar. When moving the mouse over a CDS-box, its orthologs are highlighted yellow:
File:GenDBWiki$$WebDocumentation$$DialogWindows$$OrthologViewer$ortholog viewer 2.gif
When you find an interesting CDS you may examine it further by selecting it.
Select a CDS
By clicking a CDS-box, one CDS is selected (red) and its orthologs are shown orange.
File:GenDBWiki$$WebDocumentation$$DialogWindows$$OrthologViewer$ortholog viewer 3.gif
