SAMSWiki/WebDocumentation/HowTo

Requirements for using the SAMS web frontend

• 1) To run SAMS, please use one of the following browser:
  • Mozilla
  • Netscape 7 and higher
  • Firefox
  • Konqueror

Please also enable Javascript, Cookies and Popup-windows for this site.

• 2) How to get an account, login and password for using SAMS?

The GPMS system is an online management tool responsible for controlled access of SAMS software:

• Account
• Login/password
• Restricted access etc..

Once you get a login and password, you can also check which projects you can access under thislink.

• 3) Logging in

Start the web frontend of SAMS by entering the following URL.

Log in (username and password received by email from the GPMS system). Once you have logged in, you will be able to select one of the projects you have access to. After the selection the SAMS main window is launched. A search tool allows you to search within the different fields of the system such as:

• Data import
• Clustering ESTs or running the default function prediction pipeline
• Browsing your sequence datasets
• Annotating sequence data
• Other options (Gene Ontology, KEGG pathway, COG)
• /GeNeral
• /BasicActions
• /ClassiFication
• /TooLs