IGetDBWiki/EmmaExport

From BRF-Software
Revision as of 15:11, 11 December 2006 by imported>KaiRunte
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

EMMA Export to IGetDB

After selecting your experiment you need to click on "analyse" to get to the pipeline page:

Media:IGetDBWiki$$EmmaExport$igetdb-import1

Once on the pipeline page you select the "BioMart Export" pipeline and press the "select" button:

Media:IGetDBWiki$$EmmaExport$igetdb-import2

As you can see in the next image, the exporter warns that no arrays are selected. You correct this by first selecting the tick-box next "Show advanced options"(1) and then press the button "Select Datasets"(2):

Media:IGetDBWiki$$EmmaExport$igetdb-import3

This brings you to next page where you select a significance-test (1) and then press "select"(2):

Media:IGetDBWiki$$EmmaExport$igetdb-import4

Finally, click on "Compute \& View Results" to submit the job: Media:IGetDBWiki$$EmmaExport$igetdb-import5

Running the exporter script will take some time depending on the size of the experiment. In the end, the job status should say something like "Biomart export was sucessful. Data was stored in database".