MeltDBWiki

MeltDB - Metabolomics Software Platform

MeltDB is a web based framework for the storage, analysis and visualization of metabolomic datasests and their integration with experimental data from transcriptomics, genomics and proteomics.

Please also have a look at the MeltDB website for general information.

Important information for users of Firefox 3

• Read this if you experience trouble accessing the MeltDB login page with Firefox 3.

MeltDB Tutorials & HowTos

• Upload your chromatogram data in netCDF, mzXML or mzDATA format.
• Organize your chromatograms in replicate groups.
• Combine your chromatogram groups to experiments.
• Review your raw datasets and evaluate the quality of the chromatograms.
• Upload your preprocessed results from Xcalibur.
• Define your experimental factors according to the recommendations of the MSI.
• Perform chromatogram alignments using the star like feature based approach of MeltDB..
• Detect peaks in your chromatograms using MeltDB..
• Search in MS databases and generate Observations for your Peaks..
• Perform the MeltDB profiling analysis..
• Run PCA analysis on sample experiment.
• Converting Thermo Finnigan RAW files to netCDF format

MeltDB Sample Scripts

• List all annotated peaks of a chromatogram.

Documentation

• Core API
• The MeltDB class hierarchy

MeltDB login page

• meltdb.cebitec.uni-bielefeld.de

Misc

• Rounding m/z values

Contact

Please send an e-mail for account requests or questions concerning the use of MeltDB to: MailTo(meltdb AT cebitec DOT uni DASH bielefeld DOT de)

For bug reports, please use our bug reporting system BugZilla.