EMMAWiki

EMMA 2 Overview Page

EMMA 2 - A MAGE-compliant system for storage and analysis of microarray data

EMMA 2 is a web-based system for management and analysis of transcriptomic data. EMMA 2 allows mapping of gene expression data onto proteome data or pathways and vice versa. It provides extensible analysis and visualization Plug-Ins via the R-language. EMMA 2 now supports the MAGE-ML XML-language for the interchange of microarray data. With EMMA you can do normalization of single and multiple microarrays and run statistical tests for inferring differrentially expressed genes. You can also run cluster analysis to find co-regulated genes.

• Step by Step tutorial for complete beginners
• Common problems: forgot your password? | change your password?

Please have a look at the EMMA info website for general information.

• Terms and Concepts
  • For Users
  • For Developers

Documentation

• Web Documentation
  • General Usage
  • HowTos
  • Help System
  • Online Help
  • Analysis Functions
• QuickStart Documentation (PDF)
• EMMA guidelines
• A little more in-depth description of EMMA and microarray analysis in general
• Core Documentation (Functionality of the main backend and executable scripts)
• Developer Documentation
  • Getting Started
  • API Documentation
  • Building the Heatmap Viewer
  • Developing Plugins
  • Using the WS Interface
  • MAGE-ML Exporter Generator
• Administrator Documentation(Installation, project configuration and account management)
  • SoftwareRequirements
  • InstallationInstructions
  • ProjectSetup
  • Arraylayout Guideline - conventions and definitions
• FAQs
• HowTos
  • LoggingIn
  • Creating An Experiment
  • ImportingData
  • Using the Dataset Browser
  • Emma Bridge How To

General

• News And Updates
• Feature Table
• Future Plans
• Task List

Other Issues

EMMA 2 is a free software and is distributed under the GNU General Public License (GPL). For more information about project setup, license, demo project, guided tour, workshops and PDF documentation, please go to the EMMA website.

• Software Disclaimer

Contact

Please: File:EMMAWiki$RTFM.png before submitting bug reports!

Please send

• help requests to MailTo(emma AT cebitec DOT uni DASH bielefeld DOT de)
• bug-reports and feature requests to MailTo(emma DASH devel AT cebitec DOT uni DASH bielefeld DOT de) or use BugZilla
• account requests to MailTo(emma DASH support AT cebitec DOT uni DASH bielefeld DOT de)

/!\ Please never send passwords or other confidential information to mailing lists

Developers

• Michael Dondrup
• Alexander Goesman
• Felix Tille
• Sebastian Jünemann
• Kolja Henckel

Former developers

• Manuel Stein
• Dominik Mertens
• Stefan Albaum
• Thasso Griebel
• Tim Kahlke

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Cartoon by Daniel Koch, 2004

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Copyright (C) 2004, Center for Biotechnology, Bielefeld University

Author: Michael Dondrup