EMMAWiki/AdministratorDocumentation/ProjectSetup

An EMMA 2.0 Project consists of a database and a corresponding user and group management, which is supplied by the GPMS-Project Management. The database uses the MAGE-OM object description scheme. After setting up a new project as it is described in the GPMS-Documentation, this database has to be "build up", attending the following steps:

1.) Using the O2DBI-Designer to generate the necessary Perl-modules and SQL-files: Import the MAGE+Tools.xml file. This is the MAGE-OM object description scheme.

2.) Import the Quantitationstypes and QuantitationtypeDimensions (QuantitationTypes-COMPLETE.xml)

3.) Import the Ontology information (Ontology-COMPLETE.xml)

4.) Import all necessary functions (AllTools.xml)

5.) Add the "ALL" group, if this has not already been done during the GPMS-Setup

6.) Create pipelines using the EMMA 2.0 web interface (Important: Don't forget the Import-Pipeline ArrayLayoutImport consisting of the ArrayLayout import function)

7.) Now you are able to import arraylayouts (e.g. A-MEXP-85 from www.ebi.ac.uk) (Don't forget to assign the imported arraylayout to the group "ALL", if you wish that all users will afterwards be able to use it!)