GenDBWiki/AdministratorDocumentation/DependenciesAndRequirements

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GenDB Dependencies and Requirements

To install GenDB you need at least the following software installed on your Linux/UNIX system:

  • Perl >= 5.8.3 (please see the bundle file from the GenDB Project Web Pages)
  • BioPerl >= 1.4
  • Apache 2 (mod_perl_2, ...)
  • Sun Grid Engine >= 6.0
  • either a local sequence retrieval system or access to a remote system (e.g. SRS)
  • MySQL >= 3.x
  • BLAST, InterPRO, HMMer, GLIMMER
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